View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6912_high_5 (Length: 224)

Name: NF6912_high_5
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6912_high_5
NF6912_high_5
[»] chr5 (2 HSPs)
chr5 (1-42)||(42699119-42699160)
chr5 (9-45)||(38919923-38919959)
[»] chr7 (4 HSPs)
chr7 (13-56)||(6822482-6822525)
chr7 (1-33)||(35212929-35212961)
chr7 (13-45)||(4971369-4971401)
chr7 (13-45)||(47764264-47764296)
[»] chr3 (5 HSPs)
chr3 (13-51)||(51032578-51032616)
chr3 (13-51)||(31017348-31017386)
chr3 (12-49)||(26280742-26280779)
chr3 (12-45)||(30664581-30664614)
chr3 (7-44)||(30674244-30674281)
[»] chr1 (6 HSPs)
chr1 (13-49)||(32087510-32087546)
chr1 (12-56)||(8905806-8905852)
chr1 (1-45)||(29632499-29632545)
chr1 (1-47)||(47113339-47113387)
chr1 (13-45)||(12972664-12972696)
chr1 (13-45)||(40052987-40053019)
[»] chr2 (5 HSPs)
chr2 (1-45)||(285429-285475)
chr2 (13-44)||(11980730-11980761)
chr2 (167-205)||(14954442-14954480)
chr2 (1-33)||(17999811-17999843)
chr2 (1-33)||(26809556-26809588)
[»] chr4 (2 HSPs)
chr4 (13-51)||(55996501-55996539)
chr4 (13-45)||(44250187-44250219)
[»] chr8 (3 HSPs)
chr8 (6-39)||(9306461-9306494)
chr8 (1-51)||(9048268-9048322)
chr8 (13-45)||(21649128-21649160)


Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42699119 - 42699160
Alignment:
Q  1 ttatgtttttattctctcttcctttttctctctattattttt 42  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  42699119 ttatgtttttattctctctttctttttctctctattattttt 42699160  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 38919923 - 38919959
Alignment:
Q  9 ttattctctcttcctttttctctctattatttttgac 45  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  38919923 ttattctctattcatttttctctctattatttttgac 38919959  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6822525 - 6822482
Alignment:
Q  13 tctctcttcctttttctctctattatttttgactaatcatagaa 56  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  6822525 tctctcttcctttttctctctattatttttgaccaatcaaagaa 6822482  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35212961 - 35212929
Alignment:
Q  1 ttatgtttttattctctcttcctttttctctct 33  Q
    |||||||||||||||||||||||||||||||||    
T  35212961 ttatgtttttattctctcttcctttttctctct 35212929  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 4971369 - 4971401
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    |||||||||||||||||||| ||||||||||||    
T  4971369 tctctcttcctttttctctccattatttttgac 4971401  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 47764264 - 47764296
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    |||||||||||||||||||||||| ||||||||    
T  47764264 tctctcttcctttttctctctattgtttttgac 47764296  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 51032616 - 51032578
Alignment:
Q  13 tctctcttcctttttctctctattatttttgactaatca 51  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  51032616 tctctcttcctttttctctctattatttttgaccaatca 51032578  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 31017386 - 31017348
Alignment:
Q  13 tctctcttcctttttctctctattatttttgactaatca 51  Q
    |||||||||||||||||||||||||||||| || |||||    
T  31017386 tctctcttcctttttctctctattattttttaccaatca 31017348  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 26280779 - 26280742
Alignment:
Q  12 ttctctcttcctttttctctctattatttttgactaat 49  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  26280779 ttctctcttcttttttctctctattatttctgactaat 26280742  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 30664581 - 30664614
Alignment:
Q  12 ttctctcttcctttttctctctattatttttgac 45  Q
    ||||||||||||||||||||||||| ||||||||    
T  30664581 ttctctcttcctttttctctctattgtttttgac 30664614  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 30674281 - 30674244
Alignment:
Q  7 ttttattctctcttcctttttctctctattatttttga 44  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  30674281 ttttattctctctttctttttctctttattatttttga 30674244  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32087546 - 32087510
Alignment:
Q  13 tctctcttcctttttctctctattatttttgactaat 49  Q
    ||||| |||||||||||||||||||||||||||||||    
T  32087546 tctctattcctttttctctctattatttttgactaat 32087510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 8905806 - 8905852
Alignment:
Q  12 ttctctcttcctttttct--ctctattatttttgactaatcatagaa 56  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  8905806 ttctctcttcctttttctttctctattatttttgaccaatcatagaa 8905852  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29632499 - 29632545
Alignment:
Q  1 ttatgtttttattctc--tcttcctttttctctctattatttttgac 45  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||    
T  29632499 ttatgtttttattctctctcttcctttttcgctctattatttttgac 29632545  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47113339 - 47113387
Alignment:
Q  1 ttatgtttttattctctcttcctttttctc--tctattatttttgacta 47  Q
    |||||||||||||||||||| |||||||||  |||||||||||| ||||    
T  47113339 ttatgtttttattctctctttctttttctctttctattatttttaacta 47113387  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 12972696 - 12972664
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    |||||||||||||||||||||||| ||||||||    
T  12972696 tctctcttcctttttctctctattgtttttgac 12972664  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 40052987 - 40053019
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    ||||||||| |||||||||||||||||||||||    
T  40052987 tctctcttcttttttctctctattatttttgac 40053019  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 285475 - 285429
Alignment:
Q  1 ttatgtttttattctctcttcc--tttttctctctattatttttgac 45  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||    
T  285475 ttatgtttttattctctctttctttttttctctctattatttttgac 285429  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 11980730 - 11980761
Alignment:
Q  13 tctctcttcctttttctctctattatttttga 44  Q
    ||||||||||||||||||||||||||||||||    
T  11980730 tctctcttcctttttctctctattatttttga 11980761  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 14954480 - 14954442
Alignment:
Q  167 aagtttaaactcggtttataacaattatatgcaatacca 205  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  14954480 aagtttaaactgagtttataacaattatatgcaatacca 14954442  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17999811 - 17999843
Alignment:
Q  1 ttatgtttttattctctcttcctttttctctct 33  Q
    |||| ||||||||||||||||||||||||||||    
T  17999811 ttatctttttattctctcttcctttttctctct 17999843  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26809556 - 26809588
Alignment:
Q  1 ttatgtttttattctctcttcctttttctctct 33  Q
    |||||||||||||||||||| ||||||||||||    
T  26809556 ttatgtttttattctctctttctttttctctct 26809588  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 55996501 - 55996539
Alignment:
Q  13 tctctcttcctttttctctctattatttttgactaatca 51  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  55996501 tctctcttcttttttctctctattatttttgaccaatca 55996539  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 44250219 - 44250187
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    |||||||| ||||||||||||||||||||||||    
T  44250219 tctctcttactttttctctctattatttttgac 44250187  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 9306494 - 9306461
Alignment:
Q  6 tttttattctctcttcctttttctctctattatt 39  Q
    |||||||||||||||||||||| |||||||||||    
T  9306494 tttttattctctcttcctttttttctctattatt 9306461  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9048322 - 9048268
Alignment:
Q  1 ttatgtttttattctctctt--cctttttc--tctctattatttttgactaatca 51  Q
    ||||||||||||||||||||  ||||||||  ||||||||||||||||| |||||    
T  9048322 ttatgtttttattctctcttttcctttttccctctctattatttttgacaaatca 9048268  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 21649160 - 21649128
Alignment:
Q  13 tctctcttcctttttctctctattatttttgac 45  Q
    |||||||||||||||||||| ||||||||||||    
T  21649160 tctctcttcctttttctctccattatttttgac 21649128  T

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