View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6912_low_1 (Length: 702)
Name: NF6912_low_1
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6912_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 7 - 696
Target Start/End: Original strand, 52199438 - 52200127
Alignment:
| Q |
7 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
106 |
Q |
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| T |
52199438 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
52199537 |
T |
|
| Q |
107 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatattgaaatggatgatggtgtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52199538 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatatcgaaatggatgatggtgtc |
52199637 |
T |
|
| Q |
207 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52199638 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
52199737 |
T |
|
| Q |
307 |
tcagatttcagcgatgctgtcctgtgaactccaaacaagcttatactgtcatccacgccatcatgatcattacctccatgcagaaacaccgtcatcacaa |
406 |
Q |
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| T |
52199738 |
tcagatttcagcgatgctgtcctgtgaactccaaacaagcttatactgtcatccacgccatcatgatcattacctccatgcagaaacaccgtcatcacaa |
52199837 |
T |
|
| Q |
407 |
ccctttgactagtaccatccaatgagctagccttgtagaacccttgtgctcttccaaccacacccgaatccagctcgtgcccttcagtcaactgatcatc |
506 |
Q |
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| T |
52199838 |
cactttgactagtaccatccaatgagctagccgtgtagaacccttgtgctcttccaaccacgcccgaatccagctcgtgcccttcagtcaactgatcatc |
52199937 |
T |
|
| Q |
507 |
aatcactgtcacagacccaaacatcaacttctgaactgttaatcctcctggaaggttccctgctgaaacaaacggctgattgttgctgcctgtaacaacg |
606 |
Q |
| |
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| T |
52199938 |
gatcactgtcacagacccaaacatcaacttctgaactgttaatcctcctggaaggttccctgctgaaacaaacggctgattgttgccgcctgtaacaacg |
52200037 |
T |
|
| Q |
607 |
ttgttggttccccggttttggaacacagtggaggaggactggccgttacctagtcctacgaggagtggtaagttgttgtttgtgatgatg |
696 |
Q |
| |
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| T |
52200038 |
ttgttggttccccggttttggaacacagtggaggaggactggccgttacctagtcctacgaggagtggtaagttgttgtttgtgatgatg |
52200127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 592
Target Start/End: Complemental strand, 6735433 - 6735019
Alignment:
| Q |
178 |
aggtagatattgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
277 |
Q |
| |
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||||||||| ||||||| | ||||||||| | ||||| |||||||| || ||||| ||||| || |||||| || |||||||| || |||||||| | |
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| T |
6735433 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
6735334 |
T |
|
| Q |
278 |
acttaccactcccaccaatcactgcaacttcagatttcagcgatgctgtcctgtgaactccaaacaagcttatactgtcatccacgccatcatgatcatt |
377 |
Q |
| |
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|||| ||| |||||||||||||||| | ||||||| |||| || ||||| |||| ||||||| |||||| ||||||| | |||||||||| | |
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| T |
6735333 |
acttcccagtcccaccaatcactgctatctcagattctggcgacgccgtcctatgaatcccaaacagacttatagtgtcatcagctccatcatgatgctc |
6735234 |
T |
|
| Q |
378 |
acctccatgcagaaacaccgtcatcacaaccctttgactagtaccatccaatgagctagccttgtagaacccttgtgctcttccaaccacacccgaatcc |
477 |
Q |
| |
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| | ||||||| || || || | ||||| | | ||||||||||||||||||||| ||| ||| ||||| ||||||||||| | |||| |||||| |
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| T |
6735233 |
agccccatgcaccaaaacagtaagcacaatggtcttactagtaccatccaatgagcttgccaagtaaaacccctgtgctcttcctatcacagaagaatcc |
6735134 |
T |
|
| Q |
478 |
agctcgtgcccttcagtcaactgatcatcaatcactgtcacagacccaaacatcaacttctgaactgttaatcctcctggaaggttccctgctgaaacaa |
577 |
Q |
| |
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||||| ||| |||| || ||||| |||||||| ||||||||||| |||||||| | |||||| ||||| || || || ||||| || || || ||||||| |
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| T |
6735133 |
agctcatgctcttctgttaactggtcatcaattactgtcacagaaccaaacataagcttctggactgtaaacccaccaggaagattacccgccgaaacaa |
6735034 |
T |
|
| Q |
578 |
acggctgattgttgc |
592 |
Q |
| |
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| || |||||||||| |
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|
| T |
6735033 |
aaggttgattgttgc |
6735019 |
T |
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