View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6912_low_2 (Length: 476)

Name: NF6912_low_2
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6912_low_2
NF6912_low_2
[»] chr7 (17 HSPs)
chr7 (9-277)||(12177803-12178070)
chr7 (308-468)||(12178104-12178261)
chr7 (19-189)||(22318618-22318785)
chr7 (24-158)||(42335930-42336062)
chr7 (19-175)||(26914311-26914465)
chr7 (19-173)||(35812621-35812774)
chr7 (62-215)||(3351128-3351283)
chr7 (66-174)||(15133276-15133384)
chr7 (31-174)||(26448387-26448533)
chr7 (19-189)||(40351723-40351890)
chr7 (62-144)||(21129326-21129408)
chr7 (65-143)||(30095739-30095817)
chr7 (19-175)||(3940620-3940773)
chr7 (86-186)||(21828233-21828332)
chr7 (30-114)||(26912345-26912427)
chr7 (19-174)||(13431634-13431786)
chr7 (77-142)||(36066175-36066240)
[»] chr4 (15 HSPs)
chr4 (23-217)||(12320415-12320610)
chr4 (23-189)||(43515810-43515975)
chr4 (19-189)||(7853302-7853469)
chr4 (19-156)||(23870054-23870189)
chr4 (62-207)||(35372043-35372191)
chr4 (9-189)||(3643099-3643279)
chr4 (62-222)||(5627539-5627701)
chr4 (19-143)||(36071557-36071679)
chr4 (78-186)||(55147627-55147735)
chr4 (74-148)||(29118532-29118606)
chr4 (35-156)||(7102166-7102284)
chr4 (55-174)||(20811476-20811595)
chr4 (78-155)||(2113903-2113980)
chr4 (78-106)||(9983769-9983797)
chr4 (62-106)||(29369934-29369978)
[»] chr2 (22 HSPs)
chr2 (19-175)||(5163799-5163953)
chr2 (44-224)||(16547694-16547877)
chr2 (45-216)||(36186534-36186708)
chr2 (12-189)||(30257734-30257913)
chr2 (19-186)||(28556563-28556727)
chr2 (19-144)||(17271259-17271385)
chr2 (62-189)||(2886979-2887106)
chr2 (62-175)||(37912341-37912454)
chr2 (63-189)||(34345977-34346101)
chr2 (62-175)||(16646927-16647040)
chr2 (106-189)||(34909269-34909352)
chr2 (19-104)||(35280969-35281055)
chr2 (62-151)||(38134119-38134207)
chr2 (62-120)||(28148936-28148994)
chr2 (19-144)||(38561849-38561971)
chr2 (67-156)||(4206326-4206415)
chr2 (19-110)||(36506905-36506994)
chr2 (62-144)||(15925527-15925611)
chr2 (19-53)||(28226834-28226868)
chr2 (19-104)||(40876964-40877047)
chr2 (10-179)||(39769808-39769976)
chr2 (129-189)||(15925950-15926010)
[»] chr6 (15 HSPs)
chr6 (19-224)||(35121865-35122073)
chr6 (19-189)||(9815627-9815794)
chr6 (19-189)||(34573142-34573310)
chr6 (66-224)||(33344873-33345033)
chr6 (19-189)||(12174327-12174495)
chr6 (78-189)||(34329777-34329888)
chr6 (85-213)||(4337556-4337687)
chr6 (19-151)||(31787822-31787952)
chr6 (19-175)||(10668849-10669000)
chr6 (74-173)||(32331517-32331616)
chr6 (74-150)||(31153630-31153706)
chr6 (19-104)||(34540899-34540982)
chr6 (107-186)||(34969860-34969939)
chr6 (78-189)||(11274617-11274728)
chr6 (124-156)||(19638396-19638428)
[»] scaffold0531 (1 HSPs)
scaffold0531 (19-225)||(9708-9916)
[»] chr8 (15 HSPs)
chr8 (19-213)||(13580286-13580480)
chr8 (44-189)||(13236212-13236357)
chr8 (19-185)||(4350622-4350793)
chr8 (22-139)||(22930331-22930446)
chr8 (19-144)||(26835593-26835716)
chr8 (65-186)||(43872558-43872679)
chr8 (19-114)||(34142031-34142124)
chr8 (19-151)||(9191207-9191331)
chr8 (74-155)||(24606832-24606912)
chr8 (12-155)||(9052871-9053017)
chr8 (80-156)||(35480989-35481066)
chr8 (62-142)||(22486596-22486676)
chr8 (78-182)||(26801916-26802019)
chr8 (19-112)||(28376664-28376754)
chr8 (73-114)||(18987200-18987241)
[»] chr5 (12 HSPs)
chr5 (18-189)||(32257639-32257808)
chr5 (65-189)||(10325554-10325681)
chr5 (19-151)||(12263638-12263770)
chr5 (62-185)||(7886571-7886693)
chr5 (63-174)||(25034322-25034433)
chr5 (19-143)||(502812-502931)
chr5 (62-156)||(20870678-20870772)
chr5 (80-155)||(3193510-3193585)
chr5 (19-189)||(16570450-16570618)
chr5 (62-176)||(3596879-3596993)
chr5 (78-144)||(18626722-18626788)
chr5 (78-119)||(18600251-18600292)
[»] chr1 (16 HSPs)
chr1 (19-217)||(1240434-1240637)
chr1 (44-175)||(35405366-35405497)
chr1 (62-189)||(33735699-33735831)
chr1 (78-224)||(22667113-22667260)
chr1 (78-221)||(49762370-49762515)
chr1 (62-213)||(23897827-23897982)
chr1 (82-151)||(10976110-10976179)
chr1 (19-189)||(8246671-8246842)
chr1 (78-189)||(29062320-29062431)
chr1 (19-155)||(1153713-1153846)
chr1 (78-189)||(15103005-15103112)
chr1 (19-189)||(35204172-35204337)
chr1 (19-53)||(30717897-30717931)
chr1 (23-113)||(35384135-35384224)
chr1 (97-174)||(35383783-35383859)
chr1 (62-110)||(4626564-4626612)
[»] chr3 (13 HSPs)
chr3 (19-141)||(15670925-15671045)
chr3 (7-144)||(33510096-33510234)
chr3 (19-145)||(11383598-11383724)
chr3 (62-214)||(47000793-47000946)
chr3 (67-175)||(11365100-11365208)
chr3 (62-144)||(27538784-27538866)
chr3 (23-189)||(33682616-33682780)
chr3 (19-101)||(18257924-18258008)
chr3 (65-174)||(33290750-33290858)
chr3 (62-113)||(32286011-32286062)
chr3 (20-101)||(19149892-19149971)
chr3 (78-155)||(168674-168750)
chr3 (110-186)||(52704608-52704684)
[»] scaffold0527 (2 HSPs)
scaffold0527 (74-174)||(1705-1805)
scaffold0527 (74-174)||(9768-9868)
[»] scaffold1173 (1 HSPs)
scaffold1173 (74-185)||(388-499)
[»] scaffold0031 (2 HSPs)
scaffold0031 (74-155)||(47547-47628)
scaffold0031 (19-51)||(46834-46866)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 12177803 - 12178070
Alignment:
Q  9 ggacatcaaaattatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaa 108  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  12177803 ggacatcaaaattatttttacttagtagttagtactatatagatatatatatctttttaattcggtttaattaattttattgaaaatatatttttagaaa 12177902  T
Q  109 actttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttattttgtccagggcaccaaaac 208  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||| |||||||||||||||||    
T  12177903 actttatt-atagatgaatcttttgcaacaaaaaatgtaagaagaaaactattagaataattaatagggcacaattttatttcgtccagggcaccaaaac 12178001  T
Q  209 tcttaggactggccctaaccatacgaacaaatatggtactaatttaacttagacaatgacacactccac 277  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12178002 tcttaggactggccttaaccatacgaacaaatatggtactaatttaacttagacaatgacacactccac 12178070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 308 - 468
Target Start/End: Original strand, 12178104 - 12178261
Alignment:
Q  308 gtggtgaaacttcataccaatagataaattgtcaaatttaagatcatttggagctgannnnnnn-ataaatccctagtattgactattgagacatagctt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  12178104 gtggtgaaacttcataccaatagataaattgtcaaatttaagatcatttggagctgattttttttataaatccctagtattgactattgagacatagctt 12178203  T
Q  407 ctgtt-aatttcagctatgatattgttgttttgtttggaatagacaagacttatgatgtccat 468  Q
    ||||| |||||| |||||| |||||     |||||||||||||||||||||||||||||||||    
T  12178204 ctgttgaatttctgctatgctattg-----ttgtttggaatagacaagacttatgatgtccat 12178261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 22318785 - 22318618
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| ||||||||||||||||||||||||  ||| |   |||||||| |||| |||||||||||||| |||||||||||||||||||||  |||    
T  22318785 attatttttatttagtagttaatattatatagatatgtatct---tttaattccgtttgattaattatattgagaatatatttttagaaaactttaatta 22318689  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || |  ||||||||||||||||||||||||||| |||||| ||| ||||| |||||| |||||||||||||    
T  22318688 taaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaaaagggcacaattttatt 22318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 42336062 - 42335930
Alignment:
Q  24 ttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagag 123  Q
    ||||| ||| |||||| |||||||||||||  ||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |     
T  42336062 ttttagttaatagttagtattatatagata--tatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaat 42335965  T
Q  124 gaatcttttgcaacaaaaaatgtaagaagaaaact 158  Q
    |||||||||||||||||||||||||||| ||||||    
T  42335964 gaatcttttgcaacaaaaaatgtaagaaaaaaact 42335930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 26914465 - 26914311
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgt--ttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtt 116  Q
    ||||||||||||||||||||| |||||||||    ||||||| |  |||||||||| ||| ||||||||||||||||||||||||||| | ||| ||  |    
T  26914465 attatttttacttagtagttagtattatata----catatgtttacttttaattcgttttgattaattatattgaaaatatatttttaaataacgttaat 26914370  T
Q  117 tatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaag 175  Q
    |||| | |||| ||||||||||||||||| |||||||||| | ||  ||||||||||||    
T  26914369 tataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaag 26914311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 35812621 - 35812774
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattga-aaatatatttttagaaaactttgttt 117  Q
    |||||||||||||| || ||| || ||||||||||  ||| | ||||||||||| ||| || |||| |||||| ||||||||||||||| ||||||| ||    
T  35812621 attatttttacttaataattagtactatatagata--tatttctttttaattcgctttgatcaattctattgataaatatatttttagataactttgatt 35812718  T
Q  118 atagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaa 173  Q
    ||| | |||| ||||||||||||||||| |||||||| | | ||||||||||||||    
T  35812719 ataaatgaatattttgcaacaaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 3351128 - 3351283
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||| |||||||| |||||||||||| ||||||| ||||| | |||| |||| |||||||||||| |||||||||| | ||    
T  3351128 tttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatatt 3351227  T
Q  162 ggaataattaaaagagcacaatt--ttattttgtccagggcaccaaaactcttagg 215  Q
      ||||||||||||   ||||||  || |||||| ||||| ||||||| |||||||    
T  3351228 ttaataattaaaaggaaacaatttattgttttgttcagggtaccaaaaatcttagg 3351283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 15133384 - 15133276
Alignment:
Q  66 taattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaa 165  Q
    ||||||| ||| ||||||| |||| |||| ||||||||||| ||||||| ||||| | |||| |||| |||||||||||||||||| |||| | || |||    
T  15133384 taattcgttttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaa 15133285  T
Q  166 taattaaaa 174  Q
    |||||||||    
T  15133284 taattaaaa 15133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 26448387 - 26448533
Alignment:
Q  31 tagtagttaatattatatagatacatatgtgt--ttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatc 128  Q
    ||||||||| || |||||||||| |||| | |  |||||||||  ||| ||||||| || | ||| |||||||||||| ||||||| | ||| | |||||    
T  26448387 tagtagttagtactatatagatatatatatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaatgaatc 26448486  T
Q  129 ttttgcaacaaaaaatgtaagaagaaaact-tttggaataattaaaa 174  Q
    ||||||||||||||||| ||||| |||| | |||| |||||||||||    
T  26448487 ttttgcaacaaaaaatgcaagaaaaaaaatatttgaaataattaaaa 26448533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 40351890 - 40351723
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||| |||||||| ||||||||||||| |  | | |||||||||    ||  |||||| ||||||||||||||||||| | ||||||| |||    
T  40351890 attatttttactcagtagttagtattatatagatataattat-tttttaattatccttgtttaattctattgaaaatatatttttaaagaactttgatta 40351792  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || |  |||||||  |||||||||||| ||||| ||||   || ||||||||||||| | | |||||||||    
T  40351791 taaataaatctttatcaacaaaaaatgcaagaaaaaaa--attagaataattaaaagggaagaattttatt 40351723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 21129408 - 21129326
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||||||||| ||||| ||||||| |||||||||||| |||||||| || |||| ||||| |  |||||||||||| |||||||    
T  21129408 tttttaatttggtttgattaattctattgaaaatatttttttagagaattttgattataaattaatcttttgcaataaaaaat 21129326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 30095817 - 30095739
Alignment:
Q  65 ttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaa 143  Q
    |||||||| ||| ||||||| ||||||||| ||||||||||| ||||||| ||||| | |||| |||||||| ||||||    
T  30095817 ttaattcgcttttattaattctattgaaaaaatatttttagataactttgattataaatgaatattttgcaagaaaaaa 30095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 3940773 - 3940620
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||| | ||| |||||||||  ||| | |||||||||   ||| ||||||| |||| ||||||| |||||| | ||||||| |||    
T  3940773 attatttttacttagtagtaagtataatatagata--tatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactttgatta 3940676  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaag 175  Q
    || |  |||||| ||||||| |||||  || ||||||| | || |||||||||||||    
T  3940675 taaataaatcttgtgcaaca-aaaatacaaaaagaaaaatattagaataattaaaag 3940620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 21828233 - 21828332
Alignment:
Q  86 tattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattt 185  Q
    |||||||||||  |||||||| ||||||| ||||| | ||||||| |||||||||||||  |||| ||||| | || ||||||||||||| | |||||||    
T  21828233 tattgaaaatac-tttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaaagggtacaattt 21828331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 26912345 - 26912427
Alignment:
Q  30 ttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttg 114  Q
    |||||||||| || ||||||||||  ||| | ||||||||||| ||| ||||||| |||| || ||||||||||||| |||||||    
T  26912345 ttagtagttagtactatatagata--tatttctttttaattcgctttgattaattctattcaagatatatttttagataactttg 26912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 13431786 - 13431634
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||| ||| ||||||| || |||||||||||||  ||| | ||||| |||   ||| | ||||| |||||||||||||||| | || ||| ||| |||    
T  13431786 attattcttatttagtaggtagtattatatagata--tatttatttttgattttttttgaataattctattgaaaatatatttgtggagaaccttgatta 13431689  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaa 174  Q
    |  | |||||||| ||||||||||||  ||||| ||||| ||| ||||||||||||    
T  13431688 tgaatgaatctttagcaacaaaaaatacaagaaaaaaac-tttcgaataattaaaa 13431634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 36066175 - 36066240
Alignment:
Q  77 aattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaa 142  Q
    |||||||| ||||||||||||||||||||| || |||| ||||  |  |||||||| |||||||||    
T  36066175 aattaattgtattgaaaatatatttttagagaattttgattatgaataaatcttttacaacaaaaa 36066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 12320415 - 12320610
Alignment:
Q  23 tttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttataga 122  Q
    ||||||||||||||||| ||| ||||||||| |||| |  |||||||||||||| |||||||||||||| ||||| |||||| ||||||| | ||||| |    
T  12320415 tttttacttagtagttagtataatatagatatatatct--ttttaattcggtttgattaattatattgagaatatttttttaaaaaacttcgattataaa 12320512  T
Q  123 ggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatttta---ttttgtccagggcaccaaaactcttaggac 217  Q
     |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||| |||| |||||||| |||| ||||    
T  12320513 tgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttttgttcaggacaccaaaaatcttcggac 12320610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 43515975 - 43515810
Alignment:
Q  23 tttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttataga 122  Q
    |||||||||| |||||| ||||||||||||| |||| |  |||||||| ||||| |||||||||||| | |||||||| ||||||||||||| ||||| |    
T  43515975 tttttacttattagttagtattatatagatatatatct--ttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattataaa 43515878  T
Q  123 ggaatcttttgcaacaa-aaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
     |||||||||||||||| ||||||||||||||||||| || |||||| |||||| |||||||||||||    
T  43515877 tgaatcttttgcaacaaaaaaatgtaagaagaaaactattagaataactaaaagggcacaattttatt 43515810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 7853302 - 7853469
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| || |||||||||| ||||    ||||||||| |||| |||||| |||||||||||||||||||||||||||||| |||    
T  7853302 attatttttacttagtagttagtactatatagatatatatcc--ttttaattcagtttgattaatgatattgaaaatatatttttagaaaactttgatta 7853399  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || | ||||  |||||||  |||||||||||||||||||| ||| |||||||||||| | |||||||||||    
T  7853400 taaatgaattctttgcaa-taaaaatgtaagaagaaaactattgaaataattaaaagggtacaattttatt 7853469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 23870054 - 23870189
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| || |||||||||| |||| |  |||||||||| ||| ||||||| ||||||||||||||||||||| ||||||| |||    
T  23870054 attatttttacttagtagttagtactatatagatatatattt--ttttaattcgttttgattaattctattgaaaatatatttttagataactttgatta 23870151  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaa 156  Q
    || | |||| ||||||||||||||| | ||||| ||||    
T  23870152 taaatgaatattttgcaacaaaaaaagcaagaaaaaaa 23870189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 35372191 - 35372043
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| | ||||  ||||| | ||||||  ||||||||||||||||||||||||| | ||    
T  35372191 tttttaattcagtttgattaattatattgaaaatatatttttagagagctttaattataaacgaatctcatgcaacaaaaaatgtaagaagaaaaatatt 35372092  T
Q  162 ggaataattaaaagagcacaatttta---ttttgtccagggcaccaaaa 207  Q
     ||||| ||||||  |||||| ||||   ||||||||||||||||||||    
T  35372091 agaatatttaaaatggcacaactttattgttttgtccagggcaccaaaa 35372043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 3643279 - 3643099
Alignment:
Q  9 ggacatcaaaattatt--tttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttaga 106  Q
    ||||||||||||||||  ||||||||||||||| || ||||||||||  ||| | ||||||||| |  || |||||||||||||||||  |||||||| |    
T  3643279 ggacatcaaaattattattttacttagtagttagtactatatagata--tatttctttttaatttgcattgattaattatattgaaaagttatttttaaa 3643182  T
Q  107 aaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
     | ||||| | ||| | |||| || |||||||||||||  |||||||||| | |||||||||||||||   ||||||||||||    
T  3643181 gagctttgataataaatgaattttgtgcaacaaaaaatccaagaagaaaaatattggaataattaaaatgacacaattttatt 3643099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 5627539 - 5627701
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||||||||||||| || |||||| | |||| || ||||| | |||| ||||||||||||||||| || ||||||| | ||    
T  5627539 tttttaattcgttttgattaattatattgaaaaaatgtttttatataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatt 5627638  T
Q  162 ggaataattaaaagagcacaatt--ttattttgtccagggcaccaaaactcttaggactggcc 222  Q
     ||||||||||||| |||  |||  || ||| |||||||||| ||||| |||| || ||||||    
T  5627639 tgaataattaaaagggcatgatttattgtttcgtccagggcatcaaaaatctttgggctggcc 5627701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 36071679 - 36071557
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||  |||||| || ||||||||||  ||| | |||||||||   ||| |||||||  |||||||||||||||||||| ||||||| |||    
T  36071679 attatttttacttgatagttagtactatatagata--tatttctttttaattttctttgattaattcaattgaaaatatatttttagagaactttgatta 36071582  T
Q  119 tagaggaatcttttgcaacaaaaaa 143  Q
    || | ||||||| ||||||||||||    
T  36071581 taaatgaatcttatgcaacaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 55147735 - 55147627
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    ||||||| |||||||||| | |||||||| ||||||| ||||| | ||||||| | |||||||||||  || | ||||| | || |||||||||||||||    
T  55147735 attaattttattgaaaatgtctttttagagaactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaaagag 55147636  T
Q  178 cacaatttt 186  Q
    |||||||||    
T  55147635 cacaatttt 55147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 29118532 - 29118606
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaa 148  Q
    |||||||||||||||||||||||| |||||| | ||||||| ||||  | |||| |||||||| |||||||||||    
T  29118532 tttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatattttgcaataaaaaatgtaa 29118606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 7102166 - 7102284
Alignment:
Q  35 agttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgc 134  Q
    ||||| ||||||||||||| || |   ||||||||| | ||| ||||||  ||||||||||| ||||||||| ||||||  ||||| | ||||||| |||    
T  7102166 agttagtattatatagatatattt---tttttaatttgttttgattaatcctattgaaaatacatttttagagaacttttattataaatgaatcttgtgc 7102262  T
Q  135 aacaaaaaatgtaagaagaaaa 156  Q
    |||||||| |  ||||||||||    
T  7102263 aacaaaaagtacaagaagaaaa 7102284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 20811595 - 20811476
Alignment:
Q  55 atatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagag-gaatcttttgcaacaaaaaatgtaagaaga 153  Q
    |||| ||||||||| | | |||||||| |||||||||||||||||||||| | || |||| |||| ||| |||  ||||||||| ||||||| ||||||     
T  20811595 atatttgtttttaacttgctttaattatttatattgaaaatatatttttaaagaattttgattat-gagtgaagtttttgcaacgaaaaatgaaagaagc 20811497  T
Q  154 aaacttttggaataattaaaa 174  Q
    |||   || ||||||||||||    
T  20811496 aaaacattcgaataattaaaa 20811476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 2113903 - 2113980
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    |||||||||||||||||||| |||||| | ||| ||| ||||  |  |||||||||||| |||||||  |||||||||    
T  2113903 attaattatattgaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaa 2113980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 9983797 - 9983769
Alignment:
Q  78 attaattatattgaaaatatatttttaga 106  Q
    |||||||||||||||||||||||||||||    
T  9983797 attaattatattgaaaatatatttttaga 9983769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 29369978 - 29369934
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttaga 106  Q
    ||||||||| | ||| ||||||| |||||||||||||||||||||    
T  29369978 tttttaatttgttttgattaattctattgaaaatatatttttaga 29369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 5163799 - 5163953
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| || |||||| ||| |||| |  |||||||||||||| |||||||||||||| |||||  ||||||||||||||| |||    
T  5163799 attatttttacttagtagttagtactatataaatatatatct--ttttaattcggtttgattaattatattgagaatattattttagaaaactttgatta 5163896  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaag 175  Q
    || | |||||||||| |||||||||||||||||||||||| ||| |||||| |||||    
T  5163897 taaatgaatcttttgtaacaaaaaatgtaagaagaaaactattgaaataataaaaag 5163953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 16547694 - 16547877
Alignment:
Q  44 tatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaa 143  Q
    |||||||||| |||| | ||||||||| ||||| ||||||||||||||||||||  ||||||||||||||| ||||| | | ||||||| ||||||||||    
T  16547694 tatatagatatatatttttttttaatttggtttgattaattatattgaaaatattattttagaaaactttgattataaatggatcttttacaacaaaaaa 16547793  T
Q  144 tgtaagaagaaaacttttggaataattaaaagagcacaatttta---ttttgtccagggcaccaaaactcttaggactggccct 224  Q
    ||||||||||||||| ||| ||  ||||||||  ||||||||||   ||| |||||| |||| |||| ||||||||||| ||||    
T  16547794 tgtaagaagaaaactattgaaactattaaaaggacacaattttattgtttcgtccagagcacaaaaaatcttaggactgaccct 16547877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 36186708 - 36186534
Alignment:
Q  45 atatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||||||||| |||| | ||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| ||||| |  ||||||||||||||||||||    
T  36186708 atatagatatatatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaat 36186609  T
Q  145 gtaagaagaaaacttttggaataattaaaagagcacaatttta---ttttgtccagggcaccaaaactcttagga 216  Q
    ||| ||||||||   || |||||||||||||  || |||||||   ||| ||  |||||||||||| ||||||||    
T  36186608 gtatgaagaaaaacattagaataattaaaaggacaaaattttaccgtttcgtttagggcaccaaaaatcttagga 36186534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 30257913 - 30257734
Alignment:
Q  12 catcaaaattat---ttttacttagtagttaata-ttatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaa 107  Q
    ||||||||||||   ||||||||| ||||||||| | ||||||||  |||| | |||| |||||||||| |||||||||||||||||||||||||||||     
T  30257913 catcaaaattattttttttacttaatagttaatactaatatagat--atatttcttttcaattcggtttgattaattatattgaaaatatatttttagag 30257816  T
Q  108 aactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    ||||||| ||||| |  ||||||||| ||||||||||| ||||  |||| | ||  |||| ||||||| ||||||| |||||    
T  30257815 aactttgattataaataaatcttttgaaacaaaaaatgcaagataaaaaatattaaaatatttaaaagggcacaatcttatt 30257734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 28556727 - 28556563
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| || ||||||||||||| |    ||| |||||||||| |||||||||||| |||||||||||||| | ||||||| | |    
T  28556727 attatttttacttagtagttagtactatatagatacatttcg--tttaaattcggtttgattaattatattaaaaatatatttttaaagaactttgatga 28556630  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatttt 186  Q
    || | |||||||| | || ||||||||||| || ||||   ||| |||||||||||| ||||||||||    
T  28556629 taaacgaatctttggaaataaaaaatgtaa-aaaaaaaaaattgaaataattaaaagggcacaatttt 28556563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 17271385 - 17271259
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgttttta-attcggtttaattaattatattgaaaatatatttttagaaaactttgttt 117  Q
    ||||||||||||||||||| | ||| ||||||||| |||| | |||||  ||| | ||| |||||||||||||||||||||||||||| |||||||| ||    
T  17271385 attatttttacttagtagtcagtataatatagatatatatatattttttcatttgttttgattaattatattgaaaatatatttttagcaaactttgatt 17271286  T
Q  118 atagaggaatcttttgcaacaaaaaat 144  Q
    ||| | ||||||| ||| | |||||||    
T  17271285 ataaatgaatcttgtgcgataaaaaat 17271259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 2887106 - 2886979
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||| |||| |||| ||||||||||| ||||||| ||||| |  |||| | | |||||||||||| |||||||||| | ||    
T  2887106 tttttaattcgttttgattaattctattaaaaaaatatttttagagaactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaagtatt 2887007  T
Q  162 ggaataattaaaagagcacaattttatt 189  Q
     ||||||||||||  | |||||||||||    
T  2887006 agaataattaaaaaggtacaattttatt 2886979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 37912341 - 37912454
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||| ||| | |||||||||||||||| |  ||||||| ||||| | |||| |||||||||||| |||||||| |||||| | ||    
T  37912341 tttttaattcgctttgatttattctcttgaaaatatatttttgggtaactttgattataaatgaatattttgcaacaaacaatgtaaggagaaaaatatt 37912440  T
Q  162 ggaataattaaaag 175  Q
     |||||||||||||    
T  37912441 tgaataattaaaag 37912454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 34345977 - 34346101
Alignment:
Q  63 ttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttg 162  Q
    |||||||| ||||| |||| |||||||||||||||||||||| | || |||| || || | ||| |||||||||||||||||  |||||||||| | ||     
T  34345977 ttttaatttggtttgattagttatattgaaaatatatttttatagaattttgattctaaatgaa-cttttgcaacaaaaaatacaagaagaaaaatatta 34346075  T
Q  163 gaataattaaaagagcacaattttatt 189  Q
    ||||| |||||| | ||||||||||||    
T  34346076 gaatatttaaaa-atcacaattttatt 34346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 16647040 - 16646927
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||| | ||| ||||||| |||||||||||| |||||||| || |||  ||||| | ||||||| |||||||||||||  |||||||||| | ||    
T  16647040 tttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatatt 16646941  T
Q  162 ggaataattaaaag 175  Q
      ||||||||||||    
T  16646940 aaaataattaaaag 16646927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 34909352 - 34909269
Alignment:
Q  106 aaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    |||||||||  |||| | |||| |||||||||||||||||||||||||||| | ||| ||||||||||||  || |||||||||    
T  34909352 aaaactttgactataaatgaatattttgcaacaaaaaatgtaagaagaaaattattgaaataattaaaaggacaaaattttatt 34909269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 35281055 - 35280969
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacata-tgtgtttttaattcggtttaattaattatattgaaaatatattttta 104  Q
    |||||||||||||| |||||| |||| |||||||||||| | | ||||||| | | ||| ||||||| |||||||||||||||||||    
T  35281055 attatttttacttaatagttagtattgtatagatacatattatttttttaacttgatttgattaattctattgaaaatatattttta 35280969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 38134119 - 38134207
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaa 151  Q
    ||||||| ||| ||| |||||||||||| ||||||| |||||||| ||| || ||||   | ||||||||||||||||||||||||||||    
T  38134119 tttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttacgaatgaatcttttgcaacaaaaaatgtaagaa 38134207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 28148936 - 28148994
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttata 120  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||| | ||||||| |||||    
T  28148936 tttttaattcgttttgattaattatattgaaaataaatttttaaagaactttgattata 28148994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 38561849 - 38561971
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| |||||||||| ||  |||||||||||| | |  |||||||| | ||| |||||||  ||||||||||| |||||||| ||||||  |||    
T  38561849 attatttttatttagtagttattacaatatagatacatttct--ttttaatttgttttgattaattc-attgaaaatatttttttagagaactttcatta 38561945  T
Q  119 tagaggaatcttttgcaacaaaaaat 144  Q
    || | |||| || |||||||||||||    
T  38561946 taaatgaatattgtgcaacaaaaaat 38561971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 4206415 - 4206326
Alignment:
Q  67 aattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaa 156  Q
    |||||| ||| ||||||| |||| |||| ||| ||||||| ||||||  ||||| | |||| ||||||||||||||||| ||||| ||||    
T  4206415 aattcgctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaacaaaaaatgcaagaaaaaaa 4206326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 36506994 - 36506905
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaac 110  Q
    |||||||||| |||||||||| ||||||||||  | |||| ||||||||| ||  ||| ||| ||| |||||||||||  ||||||||||||    
T  36506994 attatttttaattagtagttagtattatatag--aaatatttgtttttaactctctttgattgattctattgaaaatacgtttttagaaaac 36506905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 15925527 - 15925611
Alignment:
Q  62 tttttaattcggtttaattaattatattg---aaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||||||| ||| |||||||||||||||||   ||||||||||| |||||||||||  | || || |||||||||| ||||||||||    
T  15925527 tttttaactcgctttaattaattatattgaaaaaaatatatttctagaaaactttaataat-gatgaatcttttgtaacaaaaaat 15925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 28226868 - 28226834
Alignment:
Q  19 attatttttacttagtagttaatattatatagata 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  28226868 attatttttatttagtagttaatattatatagata 28226834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 40877047 - 40876964
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattttta 104  Q
    ||||||||||||| ||||||| ||||||||| |||  ||| | ||||||| | | ||  ||||||| |||||||||||||||||||    
T  40877047 attatttttacttggtagttagtattatataaata--tatttctttttaacttgtttggattaattctattgaaaatatattttta 40876964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 39769976 - 39769808
Alignment:
Q  10 gacatcaaaattatt---tttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttaga 106  Q
    |||||||||||||||   |||||||||||| ||||| |||||| ||| |||      ||| ||||  |||||||| ||||||||||||||| ||| ||||    
T  39769976 gacatcaaaattattagttttacttagtaggtaatagtatatacatatatac-----ttttattccatttaattagttatattgaaaatatttttgtaga 39769882  T
Q  107 aaactttgtttatagag-gaatcttttgcaac-aaaaaatgtaagaagaa-aacttttggaataattaaaagagca 179  Q
     ||| || ||||| ||| ||||||||| |||| ||||||| |||||||||  || ||| |||||||||||||||||    
T  39769881 gaacattatttat-gagcgaatcttttacaacaaaaaaatataagaagaatgacattt-gaataattaaaagagca 39769808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 15925950 - 15926010
Alignment:
Q  129 ttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    |||||||||||||||||||||||||||| | ||  |||||||| ||  | |||||||||||    
T  15925950 ttttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttatt 15926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 35122073 - 35121865
Alignment:
Q  19 attatttttacttagtagtta-atat-tatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtt 116  Q
    ||||||||||||||||||||| |||| |||||| ||| |||| | | ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||| |    
T  35122073 attatttttacttagtagttatatatatatatatatatatatatatatttaattcgctttgattaattctattgaaaatatatttttagataactttgat 35121974  T
Q  117 tatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatt--ttattttgtccagggcaccaaaactcttag 214  Q
    |||| | |||| |||||||||| ||||||  ||||||||| | || ||||||||||||| ||| ||||  || ||| |||||||||||||||| ||||||    
T  35121973 tataaatgaatattttgcaaca-aaaatgctagaagaaaaatatttgaataattaaaagggcataatttattgtttcgtccagggcaccaaaaatcttag 35121875  T
Q  215 gactggccct 224  Q
    | ||||||||    
T  35121874 ggctggccct 35121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 9815794 - 9815627
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||||||||||||| ||||||||||  ||| | ||||||||||| ||| ||||| | |||||||||||||||||||||||||| || |||    
T  9815794 attatttttacttagtagttaatactatatagata--tatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaactatgatta 9815697  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || | || | ||||| ||||||||||| |||||||| | | || ||||||||||||| |||||||||||||    
T  9815696 taaatgagt-ttttgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttatt 9815627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 34573310 - 34573142
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||| ||||||| ||||||||||||||||||| | ||||||| |||    
T  34573310 attatttttatttagtagttaatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatatttttaaagaactttgatta 34573211  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || | |||||||||  || ||| |||| || ||||||| | || ||||| || |||| |||||||||||||    
T  34573210 taaatgaatctttt--aaaaaagaatgcaaaaagaaaaatatttgaatattttaaagggcacaattttatt 34573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 33344873 - 33345033
Alignment:
Q  66 taattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaa 165  Q
    ||||||| ||| ||||||| ||||||||||||||||||||| ||||||| ||||| | |||| |||||||||||||||||  ||||||||| | || |||    
T  33344873 taattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaa 33344972  T
Q  166 taattaaaagagcacaatt--ttattttgtccagggcaccaaaactcttaggactggccct 224  Q
    |||||||||| ||| ||||  || ||| |||||||||||||||| ||||||| ||| ||||    
T  33344973 taattaaaagggcataatttattgtttcgtccagggcaccaaaaatcttagggctgaccct 33345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 12174327 - 12174495
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| || ||||||||||  ||| | ||||||||||| ||| |||||||||||| |||||||||||||||| ||||||  ||     
T  12174327 attatttttacttagtagttagtactatatagata--tatttctttttaattcgttttgattaattatattaaaaatatatttttagagaactttaattg 12174424  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || | |||||||||| |||||||| || |||||| ||| | ||| ||||| ||||| | ||||||||||||    
T  12174425 taaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaattttatt 12174495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 34329888 - 34329777
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||| |   |||||||||||||||||||| |||||||||| | || ||||||||||||| |    
T  34329888 attaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaaaaggg 34329789  T
Q  178 cacaattttatt 189  Q
    ||  ||||||||    
T  34329788 catgattttatt 34329777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 4337687 - 4337556
Alignment:
Q  85 atattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatt 184  Q
    ||||||| ||| |||||||  ||||||||| ||||| |  |||||||| |||||||||||||||||||||| || || ||||||||||||  ||||||||    
T  4337687 atattgagaatgtattttttaaaaactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaatt 4337588  T
Q  185 t---tattttgtccagggcaccaaaactctta 213  Q
    |   |||||||| |||| |||||||| |||||    
T  4337587 ttattattttgttcaggacaccaaaaatctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 31787822 - 31787952
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||| |||||| |||||| |||||  ||||||  ||| | ||||||||||| ||| ||||||| |||||||||||||||| |||| ||||||  |||    
T  31787822 attatttgtacttaatagttagtattaagtagata--tatttatttttaattcgctttgattaattctattgaaaatatatttgtagataactttaatta 31787919  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaa 151  Q
    || | |||| ||||||||| ||||||| |||||    
T  31787920 taaatgaatattttgcaactaaaaatgcaagaa 31787952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 10669000 - 10668849
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||| |||||| ||||||||||||| |||| |  ||| |||||  ||| |||||||||||||||||||| ||||||| |||| ||| |||    
T  10669000 attatttttacttattagttagtattatatagatatatatct--tttgaattca-tttgattaattatattgaaaatat-tttttag-aaacgttgatta 10668906  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaag 175  Q
    || | |||||| |||  |||||||||  || ||||||| | || |||||||||||||    
T  10668905 taaatgaatctattgagacaaaaaatccaaaaagaaaaatattagaataattaaaag 10668849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 32331616 - 32331517
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaa 173  Q
    ||||||||||| | |||||||||| |||||||| ||  || |||||| |  |||||||||||||||||||| ||||||||||| | || || ||||||||    
T  32331616 tttaattaattcttttgaaaatatttttttagagaatcttatttataaataaatcttttgcaacaaaaaatataagaagaaaagtatttgactaattaaa 32331517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 31153706 - 31153630
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaaga 150  Q
    |||||||||||||||||||||||| |||||| | ||||||| | ||  | ||||||||||||| |||||||| ||||    
T  31153706 tttaattaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgcaataaaaaatgcaaga 31153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 34540982 - 34540899
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattttta 104  Q
    ||||||||||||||||| |||||| |||||||||  |||| | || |||| ||| ||| |||| || |||||||||||||||||||    
T  34540982 attatttttacttagtaattaatactatatagat--atatttcttattaactcgttttgattagttctattgaaaatatattttta 34540899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 34969860 - 34969939
Alignment:
Q  107 aaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatttt 186  Q
    ||||||||  |||| | ||||||||| |||||||||||| |||||||||| | |||||||| | ||||| |||| |||||    
T  34969860 aaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaatagtgaaaagggcactatttt 34969939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 11274617 - 11274728
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataatt-aaaaga 176  Q
    |||||||||||||| || ||||||||||| || |||| ||||  | |||| |||||||||||||| |  ||||| ||||   |||||||| || ||||||    
T  11274617 attaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacattggaatagttaaaaaga 11274715  T
Q  177 gcacaattttatt 189  Q
     ||||||||||||    
T  11274716 acacaattttatt 11274728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 19638428 - 19638396
Alignment:
Q  124 gaatcttttgcaacaaaaaatgtaagaagaaaa 156  Q
    ||||||||| |||||||||||||||||||||||    
T  19638428 gaatcttttacaacaaaaaatgtaagaagaaaa 19638396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 9708 - 9916
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| |||||||||| || |||||||||| |||| |  |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||    
T  9708 attatttttatttagtagttagtactatatagatatatatct--ttttaattcggtttgattaattatattgagaatatatttttagaaaactttgatta 9805  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaactt--ttggaataatt-aaaagagcacaattttatttt--gtccagggcaccaaaactctta 213  Q
    || | |||  |||| ||||||||||| ||| |||||||  |  ||||||||||| ||||| |||||||||||||||  | |||||| | ||||| |||||    
T  9806 taaatgaa-gttttacaacaaaaaatataaaaagaaaaactaattggaataattaaaaagggcacaattttatttttcgcccagggtatcaaaaatctta 9904  T
Q  214 ggactggcccta 225  Q
    | || |||||||    
T  9905 gaaccggcccta 9916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 13580480 - 13580286
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||| |||||| ||||||||| |||  ||| | ||||||||||| ||| ||||||| ||||||||||||||||||| | ||||||| |||    
T  13580480 attatttttacttaatagttagtattatataaata--tatttctttttaattcgctttgattaattctattgaaaatatatttttaaataactttggtta 13580383  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatt--ttattttgtccagggcaccaaaactctta 213  Q
    || | |||| ||||||||||||||||| ||||  |||| | || |||||||||||||| || ||||  || ||| ||||||| |||||||| |||||    
T  13580382 taaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaagaacataatttattgtttcgtccaggacaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 13236212 - 13236357
Alignment:
Q  44 tatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaa 143  Q
    |||||| ||| |||| | ||||||||||| ||| ||||||| || |||||||||||||||||| ||||||| ||||| | |||| |||||||||||| ||    
T  13236212 tatatatatatatatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataa 13236311  T
Q  144 tgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    || |||||||||| | |||||||||||||||  ||| |||||||||    
T  13236312 tgcaagaagaaaaatattggaataattaaaatggcataattttatt 13236357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 4350793 - 4350622
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacat-atgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttg--- 114  Q
    |||||||||| |||||||||| ||||||||||||| || || | ||||||||||| |||  |||||| ||||||||||||||||||| | |||||||       
T  4350793 attatttttatttagtagttagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttttatataactttgatt 4350694  T
Q  115 -tttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattt 185  Q
     | |||| | |||| |||| |||||||||||| ||||| |||| | ||  |||||||||||| | |||||||    
T  4350693 atatataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaattt 4350622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 22930331 - 22930446
Alignment:
Q  22 atttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatag 121  Q
    ||||||||||| |||||| || |||||||||| |||| |  |||||||||| ||| ||||||| ||||||||| ||||||||||| ||||||| |||||     
T  22930331 atttttacttaatagttagtactatatagatatatatct--ttttaattcgctttgattaattctattgaaaaaatatttttagataactttgattataa 22930428  T
Q  122 aggaatcttttgcaacaa 139  Q
    | |||| |||| ||||||    
T  22930429 atgaatattttacaacaa 22930446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 26835716 - 26835593
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||| |||||| ||  ||||| |||  ||| | |||||||||   ||| ||||||| ||||||||||||||||||||| ||||||| |||    
T  26835716 attatttttacttaatagttagtacaatataaata--tatttctttttaattttcttttattaattctattgaaaatatatttttagagaactttgatta 26835619  T
Q  119 tagaggaatcttttgcaacaaaaaat 144  Q
    || | ||||||| |||||||||||||    
T  26835618 taaatgaatcttgtgcaacaaaaaat 26835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 43872558 - 43872679
Alignment:
Q  65 ttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttgga 164  Q
    |||||| | ||| ||||||| ||||| ||||||||||||| | ||||||| ||||| | ||||||| |||||||||||||  || ||||||| | || ||    
T  43872558 ttaatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattaga 43872657  T
Q  165 ataattaaaagagcacaatttt 186  Q
    ||||||||||| | ||||||||    
T  43872658 ataattaaaagggtacaatttt 43872679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 34142031 - 34142124
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttg 114  Q
    |||||||||| |||||||||| || ||||||||||  ||| | |||||||| || ||| ||||||| ||||||||||||||||| ||| |||||||    
T  34142031 attatttttatttagtagttagtactatatagata--tatttctttttaatccgctttgattaattctattgaaaatatattttcagataactttg 34142124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 9191207 - 9191331
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||||||||||      ||||||||  ||| | ||||||||||  ||| ||||||| |||| |||||||||||||||| |||| || |||    
T  9191207 attatttttacttagtagtta------tatagata--tatttatttttaattcactttgattaattctattcaaaatatatttttagagaactatgatta 9191298  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaa 151  Q
    || | ||||||||| ||||||| |||| |||||    
T  9191299 taaatgaatcttttacaacaaataatgcaagaa 9191331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 24606832 - 24606912
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    |||||||| || | |||||||||| |||||| | |||||| |||||| | |||||||||||| |||||||||||||||||||    
T  24606832 tttaattagttctgttgaaaatat-tttttaaagaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaa 24606912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 9052871 - 9053017
Alignment:
Q  12 catcaaaattattttt--acttagtagttaatattatatagatacatatgtgttttta-at-tcggtttaattaattatattgaaaatatatttttagaa 107  Q
    ||||||||||||||||  ||||||||||||||| |||||| ||| |||| | | | || || ||| ||||||||||| |||||||||||||| ||||||     
T  9052871 catcaaaattatttttttacttagtagttaataatatatatatatatatatatatatatatatcgctttaattaatt-tattgaaaatatatatttagag 9052969  T
Q  108 aactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    ||| ||| ||||  | || |||||| ||||||||||||| | ||||||    
T  9052970 aaccttgattatgaatgattcttttacaacaaaaaatgtgaaaagaaa 9053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 35481066 - 35480989
Alignment:
Q  80 taattatattgaaaat-atatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaa 156  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||| |  ||||||||||||||||||||  ||||||||||    
T  35481066 taattctattgaaaatgatatttttagagaacattgattataaaaaaatcttttgcaacaaaaaatacaagaagaaaa 35480989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 22486676 - 22486596
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaa 142  Q
    ||||||||| | ||| ||||||| ||||||||||||  ||||||| ||||||| ||||| | ||||||| ||||| |||||    
T  22486676 tttttaatttgttttgattaattctattgaaaatatcattttagagaactttgattataaatgaatcttgtgcaaaaaaaa 22486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 26801916 - 26802019
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    |||||||||||||||| |||||| ||||| ||| ||| ||||| | || || ||||||||||||||| ||| |||||||   ||  |||||||||||| |    
T  26801916 attaattatattgaaa-tatattattagagaacattgattataaacgagtcctttgcaacaaaaaatttaataagaaaaacattcaaataattaaaaggg 26802014  T
Q  178 cacaa 182  Q
    |||||    
T  26802015 cacaa 26802019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 28376664 - 28376754
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactt 112  Q
    ||||||||||||||||||||| || |||||||||  |||| | ||||||||||| ||| ||||| | | | | ||||||||||||||| |||||    
T  28376664 attatttttacttagtagttagtactatatagat--atatttctttttaattcgttttgattaaatttgtcg-aaatatatttttagataactt 28376754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 18987241 - 18987200
Alignment:
Q  73 gtttaattaattatattgaaaatatatttttagaaaactttg 114  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  18987241 gtttgattaattatattgaaattatatttttagagaactttg 18987200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 32257808 - 32257639
Alignment:
Q  18 aattatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttt 117  Q
    |||||||||||||||||||||| ||||| |||||||  ||| | ||||||||| | ||| ||||||| ||||||||||||| ||||||| ||||||| ||    
T  32257808 aattatttttacttagtagttagtattacatagata--tatttttttttaatttgctttgattaattttattgaaaatatacttttagagaactttgatt 32257711  T
Q  118 atagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    ||| | |||| || || ||||||||||| ||||| ||||   |||||||||||||||| ||||| |||||||    
T  32257710 ataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagggcacagttttatt 32257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 10325681 - 10325554
Alignment:
Q  65 ttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat---gtaagaagaaaactttt 161  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||| | ||| | ||||||||||||||||||||    ||| ||  |||||| |     
T  10325681 ttaattcggtttgattaattatattgagaatacatttttagaaaactttgatcataaatgaatcttttgcaacaaaaaaaaaagtaggattaaaactatc 10325582  T
Q  162 ggaataattaaaagagcacaattttatt 189  Q
    |||||||||||||| |||||||||||||    
T  10325581 ggaataattaaaagggcacaattttatt 10325554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 12263770 - 12263638
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||| | |||| || ||||||||||  | | | ||||||||||| ||| ||||||| ||||||||||||||||||| | ||||||| |||    
T  12263770 attatttttacttaatggttagtactatatagatatttttttttttttaattcgctttgattaattctattgaaaatatatttttaaagaactttgatta 12263671  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaa 151  Q
    |||| ||||||||||||| |||| ||| |||||    
T  12263670 tagatgaatcttttgcaataaaagatgcaagaa 12263638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 7886693 - 7886571
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||| |||||||||||||| |||||| ||||||| |||||   |||| ||||| ||||||||| |||||||||||| | ||    
T  7886693 tttttaattcgctttgattaattctattgaaaatatatgtttagataactttgattataagtgaatattttggaacaaaaaa-gtaagaagaaaaatgtt 7886595  T
Q  162 ggaataattaaaagagcacaattt 185  Q
     ||||||||||||  |||||||||    
T  7886594 tgaataattaaaatggcacaattt 7886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 25034433 - 25034322
Alignment:
Q  63 ttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttg 162  Q
    |||||| | ||||| ||||||| |||| ||||| |||||||||||||||||  | ||| | |||| |||||||||||||||||||||||||||||| |||    
T  25034433 ttttaaattggtttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaacaaaaaatgtaagaagaaaactattg 25034334  T
Q  163 gaataattaaaa 174  Q
     | |||||||||    
T  25034333 aagtaattaaaa 25034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 502812 - 502931
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||| ||||| |||||||||||||  ||| | ||||||| ||  ||| ||||||| ||||||||||||||||||||| ||||||| |||    
T  502812 attatttttacttag-agttagtattatatagata--tatttctttttaactc--tttgattaattctattgaaaatatatttttagagaactttgatta 502906  T
Q  119 tagaggaatcttttgcaacaaaaaa 143  Q
    |  | ||||||||||||| ||||||    
T  502907 tgaatgaatcttttgcaaaaaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 20870678 - 20870772
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaa 156  Q
    ||||||||||  ||| ||||||| |||||| |||||||||||||| ||||||| ||||| | |||| || |||||||||||||| ||||| ||||    
T  20870678 tttttaattccctttgattaattttattgataatatatttttagataactttgattataaatgaatattctgcaacaaaaaatgcaagaaaaaaa 20870772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 3193585 - 3193510
Alignment:
Q  80 taattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    |||||||||||||||||| |||||| | ||||||| ||||  | ||||||||||||| |||||||| |||||||||    
T  3193585 taattatattgaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaa 3193510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 16570618 - 16570450
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||||||| |||||  ||  |||||||||  ||| | ||||||||||  ||| ||||||| |||| |||||||||||||||| ||||||| |||    
T  16570618 attatttttacttattagttggtaccatatagata--tatttctttttaattcactttgattaattctattaaaaatatatttttagagaactttgatta 16570521  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
     | |  |||||||||| ||| |||||| || || |||| | ||| |||||||| ||  ||| |||||||||    
T  16570520 aaaattaatcttttgccacagaaaatgcaaaaacaaaaatattgaaataattagaatggcataattttatt 16570450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 3596993 - 3596879
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||| |||| |||||||||||||| |||| ||||  ||||   |||||||||| || ||||||| ||| || |||| | ||    
T  3596993 tttttaattcgttttgattaattctattaaaaatatatttttataaaaatttgaatataagtgaatcttttgaaaaaaaaaatataaaaataaaagtatt 3596894  T
Q  162 ggaataattaaaaga 176  Q
     ||||||||||||||    
T  3596893 agaataattaaaaga 3596879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 18626722 - 18626788
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||||||| ||||||| | |||||||| || ||||||| ||||| | ||||||| |||||||||||||    
T  18626722 attaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaacaaaaaat 18626788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 18600251 - 18600292
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttat 119  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  18600251 attaattatattgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 1240434 - 1240637
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattttt----agaaaactttg 114  Q
    ||||||||||||||||||||| || |||||| |||  ||| | |||||||| || ||| ||||||| ||||||||||||||||||    ||| ||||| |    
T  1240434 attatttttacttagtagttagtactatataaata--tatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcg 1240531  T
Q  115 tttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatttta---ttttgtccagggcaccaaaactct 211  Q
     ||||| | |||||||||||||||||||||| |||||||||| | |  | ||||||||||| |||||||||||   ||| ||||| |||||||| | |||    
T  1240532 attataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatct 1240631  T
Q  212 taggac 217  Q
    ||||||    
T  1240632 taggac 1240637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 35405366 - 35405497
Alignment:
Q  44 tatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaa 143  Q
    |||||| ||| |||| | ||||||||||| ||| |||||||||||| |||| ||||||||||| ||||||| ||| | | |||| |||||||||||||||    
T  35405366 tatatatatatatatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaa 35405465  T
Q  144 tgtaagaagaaaacttttggaataattaaaag 175  Q
    || |||||||||| | || |||||||||||||    
T  35405466 tgcaagaagaaaaatatttgaataattaaaag 35405497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 33735831 - 33735699
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgc-----aacaaaaaatgtaagaagaaaa 156  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||     || ||||||    |||||||||    
T  33735831 tttttaatttggtttgattaattatattgaaaatatatttttagacaactttgattataaatgaatcttttgccaaaaaaaaaaaaaaacgagaagaaaa 33735732  T
Q  157 cttttggaataattaaaagagcacaattttatt 189  Q
    || ||  |||||||||||| |||||||||||||    
T  33735731 ctattaaaataattaaaagggcacaattttatt 33735699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 22667260 - 22667113
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    ||||||| |||||||||| ||||||| || ||||||| ||||| | |||| |||||||| |||||||| |||||||||| | || ||||||||||||| |    
T  22667260 attaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaaggg 22667161  T
Q  178 cacaattt-tattttgtccagggcaccaaaactcttaggactggccct 224  Q
     | ||||| |  ||| |||| |||||||||| |||||| |||||||||    
T  22667160 tataatttattgtttctccatggcaccaaaaatcttagaactggccct 22667113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 49762515 - 49762370
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||| | || | || || |||||||||| ||||||||||| | || ||||||||||||       
T  49762515 attaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaaa-tattagaataattaaaaaga 49762417  T
Q  178 cacaatttta---ttttgtccagggcaccaaaactcttaggactggc 221  Q
    ||||||||||   ||| ||||| |||| ||||| |||||||| ||||    
T  49762416 cacaattttattgtttcgtccaaggcatcaaaaatcttaggattggc 49762370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 23897982 - 23897827
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaa--aaaatgtaagaagaaaactt 159  Q
    ||||||||| | ||| ||||||| |||| |||| ||||||||||| ||||||| ||||| | |||| |||||||||||  |||||| |||||||||| |     
T  23897982 tttttaatttgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaata 23897884  T
Q  160 ttggaat-aattaaaagagcacaatt--ttattttgtccagggcaccaaaactctta 213  Q
    || |||| ||||||||| ||||||||  || ||||| |||||||| ||||| |||||    
T  23897883 tttgaataaattaaaagggcacaatttattgttttgcccagggcaacaaaaatctta 23897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 10976179 - 10976110
Alignment:
Q  82 attatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaa 151  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  |||||||| ||| ||||||||||||||    
T  10976179 attatattgaaaatatatttttataaaactttgattataaataaatcttttacaataaaaaatgtaagaa 10976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 8246842 - 8246671
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattttt---agaaaactttgt 115  Q
    |||||||||||||| |||||| || ||||||||||  ||| | ||||||||| | ||| ||||||| ||||||||||||||||||   | | ||||||      
T  8246842 attatttttacttaatagttagtactatatagata--tatttctttttaatttgatttgattaattctattgaaaatatattttttttatagaactttaa 8246745  T
Q  116 ttatagaggaatctttt--gcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    ||||| | ||||||| |  |||||||||||| |||||| |||  | ||||| |||||| |||| ||||||||||||    
T  8246744 ttataaatgaatcttatatgcaacaaaaaatataagaaaaaa--tattggagtaattagaagaacacaattttatt 8246671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 29062431 - 29062320
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    |||||||  ||| |||||||||| ||||| ||||||  ||||| |  ||||||||||||||||||||  |||||||||  | ||||| ||||||||||||    
T  29062431 attaattcaatttaaaatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatattggagtaattaaaagag 29062332  T
Q  178 cacaattttatt 189  Q
    ||  ||||||||    
T  29062331 cattattttatt 29062320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 1153846 - 1153713
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| |||||||||| ||||| |||| ||  ||| ||||||||| ||  ||||||||||| |||| ||||||| |||| ||| ||||||| ||     
T  1153846 attatttttatttagtagttagtattaaatagtta--tatttgtttttaactcc-tttaattaattctattaaaaatatgttttaagagaactttgattt 1153750  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    |  |  ||||||||||||||||||| | |||||||||    
T  1153749 tcaattaatcttttgcaacaaaaaacgcaagaagaaa 1153713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 15103112 - 15103005
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagag 177  Q
    ||||||| |||||||   ||||||||||| ||||||| ||||| | ||||||| |||||||||||||   | ||||||| | ||| |||||||||||||     
T  15103112 attaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaat---acaagaaaa-tattgaaataattaaaagaa 15103017  T
Q  178 cacaattttatt 189  Q
    ||||||||||||    
T  15103016 cacaattttatt 15103005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 35204337 - 35204172
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||| ||| ||||||||| | | ||     ||||||| | | ||| |||||||||||||| || ||||||||||| || |||| |||    
T  35204337 attatttttacttagtaattagtattatataaaaatat-----tttttaaattgctttgattaattatattgacaa-atatttttagagaattttgatta 35204244  T
Q  119 tagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataatt-aaaagagcacaattttatt 189  Q
    |  | |||| |||||||| ||||| |  ||||| ||||   ||||||||||| |||||| ||||||||||||    
T  35204243 tgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataattaaaaagaacacaattttatt 35204172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 30717897 - 30717931
Alignment:
Q  19 attatttttacttagtagttaatattatatagata 53  Q
    ||||||||||||||||| |||||||||||||||||    
T  30717897 attatttttacttagtaattaatattatatagata 30717931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 35384224 - 35384135
Alignment:
Q  23 tttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaacttt 113  Q
    |||||| |||||||  |||| |||||| ||| |||| | |||||||||   ||| ||||||||||||| ||||||||||||||| ||||||    
T  35384224 tttttatttagtaggcaatactatata-atatatatatttttttaattatctttgattaattatattgcaaatatatttttagagaacttt 35384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 35383859 - 35383783
Alignment:
Q  97 tatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaa 174  Q
    |||||||||| ||||||| ||||| | ||| ||||||||||| |||||||||| |||||  | || ||||||||||||    
T  35383859 tatttttagagaactttgattataaatgaaacttttgcaaca-aaaatgtaagtagaaatatattagaataattaaaa 35383783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 4626612 - 4626564
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaac 110  Q
    ||||||||||  ||| ||||||| ||||||||||||||||||| |||||    
T  4626612 tttttaattctctttgattaattctattgaaaatatatttttaaaaaac 4626564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 15670925 - 15671045
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    ||||||||||||||||||||| ||  |||||||||  ||| | ||||||||| | ||| ||||||| |||||||||||| |||||||||||||||| |||    
T  15670925 attatttttacttagtagttattacaatatagata--tatttctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttgatta 15671022  T
Q  119 tagaggaatcttttgcaacaaaa 141  Q
    || | ||||||| ||||||||||    
T  15671023 taaatgaatcttgtgcaacaaaa 15671045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 33510234 - 33510096
Alignment:
Q  7 atggacatcaaaattatt---tttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattttt 103  Q
    ||||||||||||||||||   ||||||||||||||| |  || |||||||  ||| | ||||||||||| ||| |||||||  |||||||||||||||||    
T  33510234 atggacatcaaaattattatttttacttagtagttagtgctacatagata--tatttctttttaattcgttttgattaattccattgaaaatatattttt 33510137  T
Q  104 agaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||| ||||||  ||||| | |||||||||||||||||||||    
T  33510136 agagaactttaattataaatgaatcttttgcaacaaaaaat 33510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 11383598 - 11383724
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgttta 118  Q
    |||||||||| |||||||||| || |||||| ||| |||| | | ||||||||| ||| |||||||  |||||||| ||||||||||| ||||||| |||    
T  11383598 attatttttatttagtagttagtaatatatatatatatatatatctttaattcgctttgattaattcaattgaaaaaatatttttagataactttgatta 11383697  T
Q  119 tagaggaatcttttgcaacaaaaaatg 145  Q
    || | |||| |||||||||||||||||    
T  11383698 taaatgaatattttgcaacaaaaaatg 11383724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 47000946 - 47000793
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaactttt 161  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||||||| || |||| ||||| | |||| |||||||||||||||| ||||||||||| | ||    
T  47000946 tttttaattcgctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatt 47000848  T
Q  162 ggaataattaaaagagcacaattt-ta-ttttgtccagggcaccaaaactcttag 214  Q
      ||| |||||||| ||||||||| || ||||||||| | |||||||| ||||||    
T  47000847 taaatgattaaaagggcacaatttatagttttgtccatgacaccaaaaatcttag 47000793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 11365100 - 11365208
Alignment:
Q  67 aattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaat 166  Q
    |||||| ||| |||||||  |||||||| ||||||||| | ||||||| ||||| | |||| ||||||||||||||||| |||||||||| | || ||||    
T  11365100 aattcgctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaat 11365199  T
Q  167 aattaaaag 175  Q
    |||||||||    
T  11365200 aattaaaag 11365208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 27538866 - 27538784
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaat 144  Q
    ||||||||||  ||| ||||||| ||||||||||||||||||| | ||||||| ||| | | |||| ||||||||||||||||    
T  27538866 tttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaacaaaaaat 27538784  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 33682780 - 33682616
Alignment:
Q  23 tttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttataga 122  Q
    |||||||||| |||||| || || |||||||  ||| | ||||||||||  ||| ||||||| |||| ||||||| |||||| | ||| |||  |||| |    
T  33682780 tttttacttaatagttagtactagatagata--tatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaa 33682683  T
Q  123 ggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaattttatt 189  Q
    ||||||||||| ||||| |||||  ||||||||    || ||| ||||||||| |||||| ||||||    
T  33682682 ggaatcttttgtaacaacaaatgctagaagaaagacattcgaaaaattaaaagggcacaactttatt 33682616  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 18258008 - 18257924
Alignment:
Q  19 attatttttacttagtagttaatattatatagatacata--tgtgtttttaattcggtttaattaattatattgaaaatatattt 101  Q
    |||||||||||||| |||||| ||||||||| ||| |||  ||| ||||||| | | ||| |||||||||||| |||||||||||    
T  18258008 attatttttacttaatagttagtattatatacatatatatttgtttttttaactagttttgattaattatattaaaaatatattt 18257924  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 33290750 - 33290858
Alignment:
Q  65 ttaattcggtttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttgga 164  Q
    |||||| | ||| ||||||| |||||||  |||||||||||| ||||||| | ||| | ||||||| |||||||||||| | ||| |||||| | ||| |    
T  33290750 ttaatttgctttgattaattttattgaat-tatatttttagagaactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaa 33290848  T
Q  165 ataattaaaa 174  Q
    ||||||||||    
T  33290849 ataattaaaa 33290858  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 32286062 - 32286011
Alignment:
Q  62 tttttaattcggtttaattaattatattgaaaatatatttttagaaaacttt 113  Q
    ||||||| ||| ||||||||||| |||| ||| |||||||||||||||||||    
T  32286062 tttttaactcgctttaattaattttattaaaactatatttttagaaaacttt 32286011  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 19149971 - 19149892
Alignment:
Q  20 ttatttttacttagtagttaatattatatagatacatatgtgtttttaattcggtttaattaattatattgaaaatatattt 101  Q
    ||||||||| ||| ||||||||| | |||| |||  ||| | ||||||||||| ||| ||||||||||| ||||||||||||    
T  19149971 ttatttttatttaatagttaataatttataaata--tatttctttttaattcgctttgattaattatatcgaaaatatattt 19149892  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 168750 - 168674
Alignment:
Q  78 attaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    ||||||| ||||||||||||| ||||||| ||| ||| ||||  | |||||||||| ||||||||||| || ||||||    
T  168750 attaattctattgaaaatata-ttttagagaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaa 168674  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 52704684 - 52704608
Alignment:
Q  110 ctttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaaagagcacaatttt 186  Q
    ||||| ||||| | ||||||| |||||||||||||  || | ||||| | || ||||||||||||| ||||||||||    
T  52704684 ctttgattataaatgaatcttgtgcaacaaaaaatacaaaatgaaaaatattagaataattaaaagggcacaatttt 52704608  T

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Target: scaffold0527 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 1705 - 1805
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaa 173  Q
    ||||| ||||| ||||||||||||||||||||| ||||||| ||||| |  |||||||||||| |||||||| |||||||||| | ||| ||||||||||    
T  1705 tttaactaattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaa 1804  T
Q  174 a 174  Q
    |    
T  1805 a 1805  T

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Target: scaffold0527; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 9768 - 9868
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaa 173  Q
    ||||| ||||| ||||||||||||||||||||| ||||||| ||||| |  |||||||||||| |||||||| |||||||||| | ||| ||||||||||    
T  9768 tttaactaattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaa 9867  T
Q  174 a 174  Q
    |    
T  9868 a 9868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 388 - 499
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaaacttttggaataattaaa 173  Q
    |||||||||||  |||||||| ||||||||||| ||||||| ||||| |  ||| |||| ||| |||||||| |||||||||| | || |||||||||||    
T  388 tttaattaattcaattgaaaaaatatttttagataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaaa 487  T
Q  174 agagcacaattt 185  Q
     | |||||||||    
T  488 ggggcacaattt 499  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 47547 - 47628
Alignment:
Q  74 tttaattaattatattgaaaatatatttttagaaaactttgtttatagaggaatcttttgcaacaaaaaatgtaagaagaaa 155  Q
    ||||||||||| |||||||||||||||| ||| ||||||||  |||  | |||| | ||||||||| ||||| | |||||||    
T  47547 tttaattaattttattgaaaatatatttgtagcaaactttgaatatgaatgaatttcttgcaacaacaaatgcatgaagaaa 47628  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 46834 - 46866
Alignment:
Q  19 attatttttacttagtagttaatattatataga 51  Q
    ||||||||||||||||| |||||||||||||||    
T  46834 attatttttacttagtatttaatattatataga 46866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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