View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6912_low_5 (Length: 239)
Name: NF6912_low_5
Description: NF6912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6912_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 9109294 - 9109368
Alignment:
| Q |
5 |
tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatata |
79 |
Q |
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| T |
9109294 |
tgtgaaagtgactctgataagtcactggtgcagcaactcacatcagacactataactgaggtgttcctatatata |
9109368 |
T |
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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3570729 - 3570649
Alignment:
| Q |
1 |
tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatatata |
81 |
Q |
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| T |
3570729 |
tttatgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacattataattgaggtggttatatatatata |
3570649 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34501858 - 34501778
Alignment:
| Q |
1 |
tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatatatata |
81 |
Q |
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| T |
34501858 |
tttatgtgaaagtaactcagataagtcactggtgcagcaactcacatcagacactataattgaggtggtcctatatatata |
34501778 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 21371542 - 21371614
Alignment:
| Q |
5 |
tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatata |
77 |
Q |
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| T |
21371542 |
tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggtcctatata |
21371614 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40646431 - 40646479
Alignment:
| Q |
1 |
tttatgtgaaagtgactctgataagtcactggtgcagcaactcacatca |
49 |
Q |
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| T |
40646431 |
tttatgtgaaagtgactcaaataagtcaatggtgcagcaactcacatca |
40646479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 11363864 - 11363810
Alignment:
| Q |
36 |
agcaactcacatcaaacattataactgaggtgttcgtatatatataagctagtga |
90 |
Q |
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| T |
11363864 |
agcaactcaaatcagacactataattgaggtgatcctatatatataagctagtga |
11363810 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 11766446 - 11766374
Alignment:
| Q |
5 |
tgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtgttcgtatata |
77 |
Q |
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| T |
11766446 |
tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggtcctatata |
11766374 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19702537 - 19702474
Alignment:
| Q |
4 |
atgtgaaagtgactctgataagtcactggtgcagcaactcacatcaaacattataactgaggtg |
67 |
Q |
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| T |
19702537 |
atgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtg |
19702474 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 203825 - 203774
Alignment:
| Q |
174 |
gacagacgtacatataaaagaacagccattccagttcaaaacaaagtttatg |
225 |
Q |
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| T |
203825 |
gacagacttacagataaaagaacagccattccaggtcaaaacaaagtttatg |
203774 |
T |
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