View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6913_high_13 (Length: 240)

Name: NF6913_high_13
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6913_high_13
NF6913_high_13
[»] chr5 (10 HSPs)
chr5 (15-222)||(3207723-3207930)
chr5 (15-222)||(3201749-3201956)
chr5 (16-222)||(3215659-3215865)
chr5 (38-222)||(3219165-3219349)
chr5 (15-105)||(3179022-3179112)
chr5 (44-126)||(3224185-3224267)
chr5 (15-105)||(3239728-3239818)
chr5 (22-101)||(3225685-3225764)
chr5 (22-101)||(3230933-3231012)
chr5 (49-101)||(3220700-3220752)
[»] chr4 (1 HSPs)
chr4 (16-95)||(42446000-42446079)
[»] chr2 (2 HSPs)
chr2 (51-103)||(18605173-18605225)
chr2 (51-99)||(19388462-19388510)
[»] chr1 (4 HSPs)
chr1 (51-103)||(139415-139467)
chr1 (51-103)||(164815-164867)
chr1 (51-103)||(18214753-18214805)
chr1 (66-98)||(46215258-46215290)
[»] chr6 (1 HSPs)
chr6 (51-103)||(19823555-19823607)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 3207930 - 3207723
Alignment:
Q  15 tcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3207930 tcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatccgcaatcatgacaactgctaatcaggttaat 3207831  T
Q  115 cttcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3207830 cttcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggac 3207731  T
Q  215 ttgtttat 222  Q
    ||||||||    
T  3207730 ttgtttat 3207723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 3201956 - 3201749
Alignment:
Q  15 tcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaat 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||    
T  3201956 tcatcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaat 3201857  T
Q  115 cttcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggac 214  Q
    || || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  3201856 ctccatggtaagcctattttggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggac 3201757  T
Q  215 ttgtttat 222  Q
    ||||||||    
T  3201756 ttgtttat 3201749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 3215865 - 3215659
Alignment:
Q  16 catcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatc 115  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || | |||||||    
T  3215865 catctcagtggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatgacaactgcttatgaagttaatc 3215766  T
Q  116 ttcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggact 215  Q
    ||||||| ||  ||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  3215765 ttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggact 3215666  T
Q  216 tgtttat 222  Q
    |||||||    
T  3215665 tgtttat 3215659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 3219349 - 3219165
Alignment:
Q  38 tgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatcttcaaggtaagcctattttgga 137  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||| || || ||||||||||||| ||  ||||||| ||    
T  3219349 tgttgaaaaattctcatccagatcggtctcccgctgctataaaatcagcaatcatgacaactgcttatgagtttaatcttcaaggaaaagctattttaga 3219250  T
Q  138 ccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttat 222  Q
    ||||||  ||  |||||||||| |||||||||||||||||||| ||||||||| ||  |||||||| ||||| ||||||||||||    
T  3219249 ccaaaggcttaaaccagctgatttatttgccactggtgctggatatgtcaaccatttgaaagcaaacgatccaggacttgtttat 3219165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 3179022 - 3179112
Alignment:
Q  15 tcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaat 105  Q
    |||||| |||||||||||||| ||| | ||||  |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||    
T  3179022 tcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaat 3179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 3224267 - 3224185
Alignment:
Q  44 aaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatcttcaaggtaag 126  Q
    |||||| |||||||||||||||||   ||||||||||||| |||||||||||||||||  || ||||||||||||||||||||    
T  3224267 aaaactatcatccagattggtctctgtctgctataaaatcggcaatcatgacaactgcatatgaggttaatcttcaaggtaag 3224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 3239818 - 3239728
Alignment:
Q  15 tcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaat 105  Q
    |||||| |||||||||||||| ||| | ||||  |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||    
T  3239818 tcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaat 3239728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 3225764 - 3225685
Alignment:
Q  22 agtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 101  Q
    ||||| |||||||| ||| | ||||  |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3225764 agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatcggcaatcatgacaactgc 3225685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 3231012 - 3230933
Alignment:
Q  22 agtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 101  Q
    ||||| |||||||| ||| | ||||  ||||| || |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3231012 agtggtattgctgcattgatcaaaagttctcaccctgattggtcgccagccgctataaaatcagcaatcatgacaactgc 3230933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3220752 - 3220700
Alignment:
Q  49 tctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 101  Q
    ||||| || |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3220752 tctcaccctgattggtcaccagccgctataaaatcagcaatcatgacaactgc 3220700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 42446000 - 42446079
Alignment:
Q  16 catcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgac 95  Q
    ||||||||||||||||| |||||| | |||| ||||||||| |||||||| ||||| || ||||||||||| || |||||    
T  42446000 catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgac 42446079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 18605173 - 18605225
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 103  Q
    ||||||||||||||| || || ||||| |||||||| ||||||||||||||||    
T  18605173 tcatccagattggtcacctgcagctatcaaatctgctatcatgacaactgcta 18605225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 19388462 - 19388510
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaact 99  Q
    ||||||||||||||| || || ||||| |||||||| ||||||||||||    
T  19388462 tcatccagattggtcacctgcagctatcaaatctgctatcatgacaact 19388510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 139467 - 139415
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 103  Q
    ||||||||||||||| || || ||||||||||| || ||||||||||||||||    
T  139467 tcatccagattggtcacctgcagctataaaatccgctatcatgacaactgcta 139415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 164867 - 164815
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 103  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||    
T  164867 tcatccagattggtcacctgcatctataaaatccgctatcatgacaactgcta 164815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 18214753 - 18214805
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 103  Q
    |||||| |||||||| || || |||||||||||||| ||||||||||| ||||    
T  18214753 tcatcctgattggtcacctgcagctataaaatctgctatcatgacaacagcta 18214805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 46215258 - 46215290
Alignment:
Q  66 tccagctgctataaaatctgcaatcatgacaac 98  Q
    |||||||||||||||||| ||||||||||||||    
T  46215258 tccagctgctataaaatcagcaatcatgacaac 46215290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 19823555 - 19823607
Alignment:
Q  51 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 103  Q
    ||||||| ||||||| || || ||||| |||||||| ||||||||||||||||    
T  19823555 tcatccaaattggtcacctgcagctatcaaatctgccatcatgacaactgcta 19823607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University