View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_high_15 (Length: 212)
Name: NF6913_high_15
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_high_15 |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 35865700 - 35865880
Alignment:
| Q |
21 |
aacatgacaatgattgatgatgatcaaatagaaatgttttaactaaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagctct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865700 |
aacatgacaatgattgatgatgatcaaatagaaatgttttaactaaaagtaatagaccgattataatataactcaaatagcattgtgatgaagaagctct |
35865799 |
T |
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| Q |
121 |
ttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactc |
201 |
Q |
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| T |
35865800 |
ttaattaaattatagaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactc |
35865880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 35848087 - 35848209
Alignment:
| Q |
79 |
gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag |
178 |
Q |
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|||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35848087 |
gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag |
35848186 |
T |
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| Q |
179 |
ctttcttcttccacaccaaactc |
201 |
Q |
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||||||||||||||||||||||| |
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| T |
35848187 |
ctttcttcttccacaccaaactc |
35848209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 35774318 - 35774424
Alignment:
| Q |
91 |
actcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttcc |
190 |
Q |
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||||||||||| || |||||||||| |||||| ||||| || | ||||||||||||||||||||| |||||||||||||| | | ||||||||||||||| |
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| T |
35774318 |
actcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagcttttctagctttcttcttcc |
35774417 |
T |
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| Q |
191 |
acaccaa |
197 |
Q |
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|| |||| |
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| T |
35774418 |
actccaa |
35774424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 35754177 - 35754296
Alignment:
| Q |
73 |
tagaccgattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcat |
172 |
Q |
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|||||| || |||||| ||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| |||||||||||||||| |||| | |||| | |
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| T |
35754177 |
tagaccaataataataagactcaaaaagcattgtgacgaagaacctctgtaattaacttatggaaattagtgtatgatgatcctccaaaatcattagcct |
35754276 |
T |
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| Q |
173 |
ctgtagctttcttcttccac |
192 |
Q |
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| ||||||||||||||||| |
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| T |
35754277 |
ttttagctttcttcttccac |
35754296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 176 - 54
Alignment:
| Q |
79 |
gattataatataactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtag |
178 |
Q |
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|||||||||| ||||||||| || ||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176 |
gattataatagaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtag |
77 |
T |
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| Q |
179 |
ctttcttcttccacaccaaactc |
201 |
Q |
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||||||||||||||||||||||| |
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| T |
76 |
ctttcttcttccacaccaaactc |
54 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 3774 - 3673
Alignment:
| Q |
90 |
aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttc |
189 |
Q |
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||||||||||||||| |||||||||| ||| |||| || |||| |||||||||||||| |||||||||||| ||||| | || ||||||||||||| |
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| T |
3774 |
aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgcagctttcttcttc |
3675 |
T |
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| Q |
190 |
ca |
191 |
Q |
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|| |
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| T |
3674 |
ca |
3673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 619 - 536
Alignment:
| Q |
108 |
atgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttcca |
191 |
Q |
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|||||||| |||||| | ||| |||| ||||||||||| || |||||||||||| |||||| |||||||||||||||||||| |
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| T |
619 |
atgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttcca |
536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 619 - 536
Alignment:
| Q |
108 |
atgaagaagctctttaattaaattatagaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttcca |
191 |
Q |
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|||||||| |||||| | ||| |||| ||||||||||| || |||||||||||| |||||| |||||||||||||||||||| |
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| T |
619 |
atgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtagcttctgtagctttcttcttcca |
536 |
T |
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