View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_high_5 (Length: 507)
Name: NF6913_high_5
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 39278406 - 39278885
Alignment:
| Q |
7 |
gagatgaagctgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaataatttatatcatt |
106 |
Q |
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| T |
39278406 |
gagatgaagctgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaagaatttatatcatt |
39278505 |
T |
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| Q |
107 |
ctagagaaattcaggaaaagctgaaacaaagtatgtcctccttagagcacgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtt |
206 |
Q |
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| T |
39278506 |
ctagagaaattcaggaaaagctgaaacaaagtatgtcctccttagagcacgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtt |
39278605 |
T |
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| Q |
207 |
tgaggctgacaatgcacatgagattctgatgggaatttcaaaaagtctgttgagtagactccagatttctcatttcaatttgaatggtttaagtcggcgt |
306 |
Q |
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| T |
39278606 |
tgaggctgacaatgcacatgagattctgatgggaatttcaaaaagtctgttgagtagactccagatttctcatttcaatttgaatggtttaagtcggcgt |
39278705 |
T |
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| Q |
307 |
gaatccgagcttcaagctaagctcgaaacttttgtagaacaattaaataccagggatattattttgaacaagattgaaagcagcaccggtgaattaaatg |
406 |
Q |
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| T |
39278706 |
gaatccgagcttcaagctaagctcgaaacttttgtagaacaattaaataccagggatattattttgaacaagattgaaagcagcaccggtgaattaaatg |
39278805 |
T |
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| Q |
407 |
tctctcttataggtcagacaaatggttcagaagctagttcaaaagacgccgaagatacaaaaatcccttctgatcctgag |
486 |
Q |
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| T |
39278806 |
tctctcttataggtcagacaaatggttcagaagctagttcaaaagacgctgaagatacacaaatcccttctgatcctgag |
39278885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 463
Target Start/End: Complemental strand, 31466590 - 31466488
Alignment:
| Q |
360 |
ggatattattttgaacaagattgaaagcagcaccggtgaattaaatgtctctcttataggtcagacaaatggttcagaagctagttcaaaagacgccgaa |
459 |
Q |
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| T |
31466590 |
ggatattattatgaacacgactgaaagcagcaccggtgaattaaa-caccctcttctaggtcaaacacatggtgcagaagctaattcaaaagacgctgaa |
31466492 |
T |
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| Q |
460 |
gata |
463 |
Q |
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| T |
31466491 |
gata |
31466488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 5662221 - 5662314
Alignment:
| Q |
155 |
acgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtttgaggctgacaatgcacatgagattctgatgggaatttcaaa |
248 |
Q |
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| T |
5662221 |
acgagttaattcaaacagaggaagaagcgatcgaagtttgggaaagattttttgaggcagacaatgcgcgtgagatcctgaagggaatttcaaa |
5662314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 5662083 - 5662164
Alignment:
| Q |
17 |
tgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaataattt |
98 |
Q |
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| T |
5662083 |
tgcaaacaactgagcaacatagaaacattttgaggatgcttgagaaatctttggcaaatgaaatagatctcgagaagaattt |
5662164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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