View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_low_10 (Length: 449)
Name: NF6913_low_10
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 147 - 417
Target Start/End: Complemental strand, 7804122 - 7803852
Alignment:
| Q |
147 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
246 |
Q |
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| T |
7804122 |
gtataaagagtataagggcctctcaaaattaaatgacatgcatagatcagaatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
7804023 |
T |
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| Q |
247 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgg |
346 |
Q |
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| T |
7804022 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacatcatagcgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgg |
7803923 |
T |
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| Q |
347 |
gaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagtcaaaaggcccttattaat |
417 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| |
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| T |
7803922 |
gaaatagagtatgaataagagttgatggttgttctggttttctagatggaagtcaaaaggcccttactaat |
7803852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 147 - 417
Target Start/End: Complemental strand, 7833517 - 7833250
Alignment:
| Q |
147 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
246 |
Q |
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| T |
7833517 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcagaatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
7833418 |
T |
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| Q |
247 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgg |
346 |
Q |
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| T |
7833417 |
aattgagtttcaaaaaagaagagtgaagaaccaaaggaaataatagtgcatgcatttatattgagtgaattaggttggatgaatgcgccaataggcatgg |
7833318 |
T |
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| Q |
347 |
gaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagtcaaaaggcccttattaat |
417 |
Q |
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| T |
7833317 |
gaaatagagtatgaatcagagttgatg---gttctggttttctagatggaagtcaaaaggccattattaat |
7833250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 147 - 399
Target Start/End: Complemental strand, 7784054 - 7783802
Alignment:
| Q |
147 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7784054 |
gtataaagagtataagggcctcttaaaattaaatgacatgcataggtcagaatggtttccacattatttcggccagccactgaacagtttgaaaagattg |
7783955 |
T |
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| Q |
247 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgg |
346 |
Q |
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| T |
7783954 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgtatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgg |
7783855 |
T |
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| Q |
347 |
gaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagt |
399 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| | |||||| |
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| T |
7783854 |
gaaatagagtatgaataagagttgatggttgttctggttttctagatggaagt |
7783802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 17294920 - 17295074
Alignment:
| Q |
201 |
gtttccacattatttcggccagccacggaacagtttgaaaagattgaattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgca |
300 |
Q |
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|||||||||||||| |||||||||| || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
17294920 |
gtttccacattattacggccagccatggtacagtttgaacagattgaattgagtttaaaaaaagaagagtgaagcaccaaaggaggtaatagtgcatgtc |
17295019 |
T |
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| Q |
301 |
tttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagag |
355 |
Q |
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|||| || |||||||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
17295020 |
tttacatcgagtgaattaggttggatgaatttgccaacaggcgtgggaaatagag |
17295074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7784198 - 7784117
Alignment:
| Q |
4 |
aacaatatatatgtacttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
85 |
Q |
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| T |
7784198 |
aacaatatacaggtacttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
7784117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7804265 - 7804184
Alignment:
| Q |
4 |
aacaatatatatgtacttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
85 |
Q |
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| T |
7804265 |
aacaatatacaggtacttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
7804184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7833660 - 7833579
Alignment:
| Q |
4 |
aacaatatatatgtacttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
85 |
Q |
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| T |
7833660 |
aacaatatacaggtacttcatcttcaacttattcatagctttttccaggtcagaaacagggttggaaaccaacggagctacc |
7833579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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