View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_low_11 (Length: 438)
Name: NF6913_low_11
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 51105750 - 51105339
Alignment:
| Q |
9 |
attgaaggaaagaacgatatgatgtaacaattttctttataacacaagttgatccaagagtgagaggtgaataacagaaattatcacaccgagtaacatt |
108 |
Q |
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| T |
51105750 |
attgaaggaaagaacgatatgatgtaacaattttctttataacacaagttgatccaagggtgagaggtgaataacagaaattatcacaccgagtaacatt |
51105651 |
T |
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| Q |
109 |
gattgaactaaaaataccttatttctctcatttgctggaagagttcaaccgaatagatgttatcattgtctgcaaaataaacaattccattgaggcaatg |
208 |
Q |
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| T |
51105650 |
gattgaactaaaaataccttatttctctcatttgctggaagagttcaaccgaatagatgttatcattgtttgcaaaataaacaattccattgaggcgatg |
51105551 |
T |
|
| Q |
209 |
agtttcaatgtgagctattgcaacatttctcataagaatgctcctatggtttgtgttggttagattcattttgcatatgagatgtctatacataattcca |
308 |
Q |
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| T |
51105550 |
agtttcaatgtgagctattgcaacatttctcataagaatgctcctatggcttgtgttggttagattcattttgcatatgagatgtctatacataatgcca |
51105451 |
T |
|
| Q |
309 |
ctacttctcaaaatgtcagcagtttcatcagattgagaattcatctcaacaacaatccacaacaaaggaggggagaccaatttcaaagtttgtgacaagt |
408 |
Q |
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| T |
51105450 |
ctacttgtcaaaatgtcagcagtttcatcagattgagaattcatctcaacaacaatccacaacaaaggaggggaaaccaatttcaaagtttgtgacaagt |
51105351 |
T |
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| Q |
409 |
gatgcaaataat |
420 |
Q |
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| T |
51105350 |
gatgcaaataat |
51105339 |
T |
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