View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6913_low_12 (Length: 372)
Name: NF6913_low_12
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 79 - 358
Target Start/End: Original strand, 22456057 - 22456337
Alignment:
| Q |
79 |
gaaatattaagattt-atattatacaatgaacttttgacattaaacagtctgtaacattgaaataaggaacctttgacatatactaaacttgtgaatcta |
177 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22456057 |
gaaagattaagattttatattatacaatgaacttttgacattaaacaatctgtaacattgaaataaggaacctttgacatatactaaacttttgtatcta |
22456156 |
T |
|
| Q |
178 |
tgtttaaacactgcctcaataagagcttaataagtgattcaccaatggagtactcacgactttaacactattcttgtcaatatgttgtcacatttttaaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
22456157 |
tgtttaaacactgcctcaataagagcttaataagtgattcaccaatggagtactcacgactttaacattattcttgtcaatatgttgtcacattttcaaa |
22456256 |
T |
|
| Q |
278 |
atagattttctgagagagccataattttctaacactcgtatccttatcaataaccatctcaaaaatcttcttaacaacacc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22456257 |
atagattttctgagagagccataattttctaacactcgtatccttatcaataaccatctcgaaaatcttcttaacaacacc |
22456337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 33559637 - 33559685
Alignment:
| Q |
130 |
taacattgaaataaggaacctttgacatatactaaacttgtgaatctat |
178 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
33559637 |
taacactgacataaggaacctttgacatatacttaacttctgcatctat |
33559685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University