View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_low_14 (Length: 298)
Name: NF6913_low_14
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 6196806 - 6197101
Alignment:
| Q |
1 |
accgttgttaaaaccttgattcataaatatctgaaacaaaatcataaaacactgcttacttgtgggtttgagtgtgccatccagatatagtggctgcttc |
100 |
Q |
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| T |
6196806 |
accgttgttaaaaccttgattcataaatatctgaaacaaaatcataaaacactgcttacttgtgggtttgagtgtgccatccagatatagtggctgcttc |
6196905 |
T |
|
| Q |
101 |
agccaaggcaactttccagttaagcactttaagatcattggtcccaagatctcgctcatgttttgcgaatgcattctcataactgccagtctgatttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6196906 |
agccaaggcaactttccagttaagcactttaagatcattggtcccaagatctcgctcatgttttgcgaatgcattctcataactgccagtctgatttctt |
6197005 |
T |
|
| Q |
201 |
atgttagatggatctgttttatagaaaacaggtataacaacttgacctttgacttttctgcattccagtactttgaccagttcttccaaacaccat |
296 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6197006 |
atgtcagatggatctgttttatagaaaacaggtataacaacttgacctttgacttttctgcattccagtactttgaccagttcttccaaacaccat |
6197101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 138 - 296
Target Start/End: Original strand, 6074436 - 6074594
Alignment:
| Q |
138 |
ttggtcccaagatctcgctcatgttttgcgaatgcattctcataactgccagtctgatttcttatgttagatggatctgttttatagaaaacaggtataa |
237 |
Q |
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|||||||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
6074436 |
ttggtcccaagatctctctcgtgttttgcaaatgctttctcataactatgagtctgatttcttatgtgagacggatttgttttatagaaaacaggtataa |
6074535 |
T |
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| Q |
238 |
caacttgacctttgacttttctgcattccagtactttgaccagttcttccaaacaccat |
296 |
Q |
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| T |
6074536 |
caacttgaccatggtcttttctgcattccagcactttcaccagttcttccaaacaccat |
6074594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 6074338 - 6074385
Alignment:
| Q |
55 |
cttacttgtgggtttgagtgtgccatccagatatagtggctgcttcag |
102 |
Q |
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|||||||||| || ||||||| |||||||||||||||||||||||||| |
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| T |
6074338 |
cttacttgtgagtatgagtgtcccatccagatatagtggctgcttcag |
6074385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 296
Target Start/End: Complemental strand, 37450382 - 37450224
Alignment:
| Q |
138 |
ttggtcccaagatctcgctcatgttttgcgaatgcattctcataactgccagtctgatttcttatgttagatggatctgttttatagaaaacaggtataa |
237 |
Q |
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|||||||| || || ||||||||||| ||||||||| ||||||||||| | |||| |||||||||| ||| ||||||| |||||| ||||||||||||| |
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| T |
37450382 |
ttggtcccgagctcacgctcatgtttcgcgaatgcagtctcataactggctttctggtttcttatgtgagaaggatctgctttataaaaaacaggtataa |
37450283 |
T |
|
| Q |
238 |
caacttgacctttgacttttctgcattccagtactttgaccagttcttccaaacaccat |
296 |
Q |
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||| |||||| | ||||||| ||||| || |||||||| |||||||||||||||||| |
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| T |
37450282 |
caatttgaccatgatcttttctacattcgagcactttgacgagttcttccaaacaccat |
37450224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 37450498 - 37450404
Alignment:
| Q |
37 |
caaaatcataaaacactgcttacttgtgggtttgagtgtgccatccagatatagtggctgcttcagccaaggcaactttccagttaagcacttta |
131 |
Q |
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|||| |||||||| |||||||||| | ||| ||| ||| ||||||||||||| |||||||||||| | |||| ||||||| |||||||||||| |
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| T |
37450498 |
caaattcataaaaaactgcttactcataggtgtgactgtcccatccagatatattggctgcttcagtaagggcagctttccatttaagcacttta |
37450404 |
T |
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