View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6913_low_15 (Length: 287)
Name: NF6913_low_15
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 45106740 - 45107001
Alignment:
| Q |
21 |
tgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106740 |
tgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaaatgttttaccaacaagtgagtcgagcaaatt |
45106839 |
T |
|
| Q |
121 |
gaaaccatgattatgaatataaccacacaatatattttcggacggatatcctgcattcaaaagtatatttgatcaagaacagaaaattaaaaataaaagc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45106840 |
gaaaccatgattatgaatataaccacacaatatattttcggacggatatcctgcattcataagtatatttgatcaagaacagaaaatttaaaataaaagc |
45106939 |
T |
|
| Q |
221 |
atactcaatttctacggttaattcaattttttccctagaaaatgtgtgtgatgaaggggaga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106940 |
atactcaatttctacggttaattcaattttttccctagaaaatgtgtgtgatgaaggggaga |
45107001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 5623549 - 5623484
Alignment:
| Q |
24 |
gtcgggtttcaaactgaatatgttcctcttttggtagccagcatatttccttgaaggatcatacaa |
89 |
Q |
| |
|
||||||||| ||||| | |||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
5623549 |
gtcgggttttaaactcatgatgttccttttttggtagccggcatattttcttgatggatcatacaa |
5623484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University