View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6913_low_16 (Length: 245)
Name: NF6913_low_16
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 4077115 - 4077347
Alignment:
| Q |
13 |
aacctgtgcaggatgatattttgtgtcaacatatgattataacggtatataccaagcattttatccaacaaagtaacagcataacgttaccggtttttta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
4077115 |
aacctgtgcaggatgatattttgtgtcaacatatgattataacgatatataccaagcattttatccaacaaagtaacagcatagcattaccggtttttta |
4077214 |
T |
|
| Q |
113 |
tgaatcccaagttgagcccaagttatcatctccagaagctcttccatagttccatatcctcctgattatgaggatagaatggagggtatgagaaaaaggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4077215 |
tgaatcccaagttgagcccaagttatcatctccagaagctcttccatagttccatatcctcctgattatgaggatagaatggagggtatgagaaaaaggt |
4077314 |
T |
|
| Q |
213 |
aacagtcaacattatacattcaatagagcaatc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4077315 |
aacagtcaacattatacattcaatagagcaatc |
4077347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University