View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_low_3 (Length: 546)
Name: NF6913_low_3
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 1404015 - 1404437
Alignment:
| Q |
7 |
gatggacatcaacaatggtggtgcctgagatttgtgaaatgagaaacctcttttgttgtgctaagttggttgttagtagtgcgctttcgaggcacgagag |
106 |
Q |
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| T |
1404015 |
gatggaaaccaacaatggtggtgcctgagatttgtgaaatgagaaacctcttttgttgtgctaagttggttgttagtagtgcgctttcgaggcacgagag |
1404114 |
T |
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| Q |
107 |
ccgcggtttacattacaccattgattttccaaacctcgaagaaagtgagagacttccaacaattatttttccaagttcacctttaatcagtacatggagt |
206 |
Q |
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| T |
1404115 |
ccgcggtttacattacaccattgattttccaaacctcgaagaaagtgagagacttccaacaattatttttccaagttcacctttaatcagtacatggagt |
1404214 |
T |
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| Q |
207 |
tctagacaattacagaagcagcctatgtatcaataaggcatcaatttctgcaaataatatatatgaaattcagcaaaataaataccaaaagggacgggaa |
306 |
Q |
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| T |
1404215 |
tctagacaattacagaagcagcctatgtatcaataaggcatcaatttctgcaaataatatatatgaaattcagcaaaataaataccaaaagggaagggaa |
1404314 |
T |
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| Q |
307 |
tagtcattggctcgaattatgtattcggattgtctttcctctcccttatagttaactgattattttgtcgatgaggtgtcaactttatggtaagagttcg |
406 |
Q |
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| T |
1404315 |
tagtcattggctcgaattatgtattcggattgtctttcctctcccttatagttaactgattattttgtcgatgaggtgtcaactttgtggtaagagttcg |
1404414 |
T |
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| Q |
407 |
accttgtaacctcgagacatata |
429 |
Q |
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| T |
1404415 |
accttgtaacctcgagacatata |
1404437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 425 - 530
Target Start/End: Original strand, 1404458 - 1404563
Alignment:
| Q |
425 |
atatatataggtaatttgggttagtatccctttctaacagctgtatgatgtatcagtttcagattgtgatcaaatctcaagttataaatttatatatatt |
524 |
Q |
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| T |
1404458 |
atatatataggtaatttgggttagtatccctttctaacagctgtatgatgtatcagtttcagattgtgatcaaatctcaagttataaatttatatatatt |
1404557 |
T |
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| Q |
525 |
ggtact |
530 |
Q |
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|||||| |
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| T |
1404558 |
ggtact |
1404563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 7255991 - 7255872
Alignment:
| Q |
312 |
attggctcgaattatgtattcggattgtctttcctctcccttatagttaactgattattttgtcgatgaggtgtcaacttta----tggtaagagttcga |
407 |
Q |
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| T |
7255991 |
attgggtcgaattatgtattcggattgtctttcctcttccttataattaactgattattttgtcgataaggtttcaactcaatggttggtaaaagtttga |
7255892 |
T |
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| Q |
408 |
ccttgtaacctcgagacata |
427 |
Q |
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| T |
7255891 |
ccttgtaacctcgagacata |
7255872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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