View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6913_low_4 (Length: 545)
Name: NF6913_low_4
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Original strand, 19202230 - 19202743
Alignment:
| Q |
20 |
cgggggtggaggaggagcatttggtaccgtgctgttagnnnnnnnnccagtgaaagtcgaagtctttttcattgatggtgcaggagtaatggctttttct |
119 |
Q |
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| T |
19202230 |
cgggggtggaggaggagcatttggtaccgtgctgttagttttttttccagtgaaagtcgaagtctttttcattgatggtgcaggagtaatggctttttcc |
19202329 |
T |
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| Q |
120 |
ggtttcttttcttctataaccgaggatgttgacaccttgtcaccctggtcatctttagatctaaatgaacctaaacgtgatgcagactaagtttaataaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19202330 |
ggtttcttttcttctataaccgaggatgttgacaccttgtcaccctggtcatctttagatctaaatgaacctaaacatgatgcagactaagtttaataaa |
19202429 |
T |
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| Q |
220 |
cttgannnnnnnnnnnnnnnnctatttaagaataatggtaattatgattcataaatggagtggtatgtgctcatctttacctgataatcgcttggatgta |
319 |
Q |
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| T |
19202430 |
cttgattttttttgtttttt--tacttaagaataatgataattatgattcataaatggactgctatgtgctcaactttacctgataatcgcttggatgca |
19202527 |
T |
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| Q |
320 |
cttccgagaagggactttgaagattttgtgctgtctaccttgcttttgaccttggccgatgaggcctccggggtctcactcttctgctcaaatgtctctt |
419 |
Q |
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|| | |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19202528 |
ctactgagaagggactttgaagattttgtgctgtccatgttgcttttgaccttggccgatgaggcctccggggtctcactcttctgctcaaatgtctctt |
19202627 |
T |
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| Q |
420 |
gcaaattaattgataatgcagcagcagctactgctgcagcatgcaccatttctatgtagtcgtaatcacggcctgttttacttgaaagctgtttttgcaa |
519 |
Q |
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| T |
19202628 |
gcaaattaattgataatgcagcagcagctactgctgcagcatgcaccatttctatgtagtcgtaatcacggcctgttttacttgaaagctgtttttgcaa |
19202727 |
T |
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| Q |
520 |
ccaattctggcccttc |
535 |
Q |
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| T |
19202728 |
ccaattctggcccttc |
19202743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 165 - 534
Target Start/End: Original strand, 19198301 - 19198671
Alignment:
| Q |
165 |
tggtcatctttagatctaaatgaacctaaacgtgatgcagactaagtttaataaacttgannnnnnnnnnnnnnnnctatttaa-gaataatggtaatta |
263 |
Q |
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| T |
19198301 |
tggtcatctttagatctaaaagaacctaaacatgatgcagacaaagtttaataaacttgattttgtttttgtttttttacttaaagagtaatggtaatta |
19198400 |
T |
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| Q |
264 |
tgattcataaatggagtggtatgtgctcatctttacctgataatcgcttggatgtacttccgagaagggactttgaagattttgtgctgtctaccttgct |
363 |
Q |
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| T |
19198401 |
tgattcataaatggagtggtatgtgctcatctttacctgataatcgcttggatatactactgagaagggactttgaagattttgagctgtctaccttgct |
19198500 |
T |
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| Q |
364 |
tttgaccttggccgatgaggcctccggggtctcactcttctgctcaaatgtctcttgcaaattaattgataatgcagcagcagctactgctgcagcatgc |
463 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
19198501 |
tttgaccttggccaatgaggcctccggggtctcactcttctgctcagaggtctattgcaaattaattgagaatgcagcagcagctactgctgcaccatgc |
19198600 |
T |
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| Q |
464 |
accatttctatgtagtcgtaatcacggcctgttttacttgaaagctgtttttgcaaccaattctggccctt |
534 |
Q |
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||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
19198601 |
accatatctatgtagtcgcaatcacgacctgttttacttgaaagctgtttttgtaaccaactctggccctt |
19198671 |
T |
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