View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6913_low_5 (Length: 535)

Name: NF6913_low_5
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6913_low_5
NF6913_low_5
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-528)||(8347-8869)
[»] chr6 (8 HSPs)
chr6 (87-470)||(11618370-11618753)
chr6 (109-515)||(11631501-11631907)
chr6 (87-515)||(11663141-11663569)
chr6 (78-515)||(11710015-11710452)
chr6 (112-515)||(11673525-11673928)
chr6 (110-183)||(12093565-12093638)
chr6 (110-489)||(11739337-11739716)
chr6 (110-171)||(11756309-11756370)
[»] scaffold0196 (1 HSPs)
scaffold0196 (73-512)||(12680-13119)
[»] chr1 (2 HSPs)
chr1 (326-513)||(44811728-44811915)
chr1 (109-180)||(44812055-44812126)
[»] chr4 (3 HSPs)
chr4 (87-175)||(31291038-31291126)
chr4 (401-494)||(38151448-38151541)
chr4 (96-168)||(27957851-27957923)


Alignment Details
Target: scaffold0019 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 6 - 528
Target Start/End: Original strand, 8347 - 8869
Alignment:
Q  6 catcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtcttgtgggtgtgagaagggaataaaactttaccgttccctttgtttt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  8347 catcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgtttt 8446  T
Q  106 ttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatg 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447 tgaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatg 8546  T
Q  206 ttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatcatcgaagcattttttcttga 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  8547 ttccttagtgttggttttgatgcattaccttcccatgaaaagtcagaacattttattgaaattgagcctttaaggttatcattgaagcattttttcttga 8646  T
Q  306 aattttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttga 405  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8647 aattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttga 8746  T
Q  406 aattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagca 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8747 aattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagca 8846  T
Q  506 gataccaacaatggtgatgtcca 528  Q
    |||||||||||||||||||||||    
T  8847 gataccaacaatggtgatgtcca 8869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 8e-90; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 87 - 470
Target Start/End: Complemental strand, 11618753 - 11618370
Alignment:
Q  87 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg 186  Q
    |||| ||||||||||||||  |||||||||||||||||||||| | ||  ||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  11618753 ttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcccatg 11618654  T
Q  187 tctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatca 286  Q
    |||||| || | | |||||||||| |||| ||| ||||| |  |||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||     
T  11618653 tctaacatctaaatttatgttccttagtgatggctttgacgagttaccttcccatgaaaagtcggcacattttattgaaattgtgtctttgaggtcatct 11618554  T
Q  287 tcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaa 386  Q
    |  |||||  | ||| | |||||||| ||||||||||| ||||||||||||| ||||||||||||||  || |||||||| |||| ||||||| ||||||    
T  11618553 ttaaagcacctgttcctaaaattttcactctgcagttctggtgcctcaaggaaattaacaatccgagcaaatgcaactttcgcctgaatgatcgctgcaa 11618454  T
Q  387 taacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaa 470  Q
    |||| ||||||||| ||| |||||| |||||||  || ||||||||||| || |  ||||||||||||||||||| || |||||    
T  11618453 taacttctgggatgtttgcaattggatcttgaacaaggcgcaaagttgcgaccaatgtgaaaacattacttgcattcagaggaa 11618370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 109 - 515
Target Start/End: Original strand, 11631501 - 11631907
Alignment:
Q  109 aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttc 208  Q
    ||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||  ||||||| | | ||||||||    
T  11631501 aacttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttc 11631600  T
Q  209 ctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatcatcgaagcattttttcttgaaat 308  Q
    | ||| ||||| ||||||||||||||||||||||||||||  | | |||||||||||||||| ||||| ||||  ||||| ||||| |  ||||| ||||    
T  11631601 cgcagggttggctttgatgcattaccttcccatgaaaagttagcagattttattgaaattgatcctttgaggttgtcatcaaagcactcgttcttcaaat 11631700  T
Q  309 tttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaat 408  Q
    |||| ||||||||||| ||||| ||||||| | ||||||| ||||  || ||||||||||||| ||||||||| ||||| |||||||| || |||| |||    
T  11631701 tttcactctgcagttctggtgcatcaaggaaagtaacaattcgagcaaatgcaacttttgcctgaatgatcaccgcaatgacatctggaatacttgtaat 11631800  T
Q  409 tggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagat 508  Q
    ||| |||||||  || |||| ||||||||||| ||||||||||||||||||||| |||||||  | ||  || |||||||||||||||||||||| |||     
T  11631801 tggctcttgaacaaggcgcacagttgccacaaaagtgaaaacattacttgcatgtaaaggaatatccaagaagtaacatgctagaaaagaagcagtagac 11631900  T
Q  509 accaaca 515  Q
    |||||||    
T  11631901 accaaca 11631907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 87 - 515
Target Start/End: Complemental strand, 11663569 - 11663141
Alignment:
Q  87 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg 186  Q
    |||| ||||||||||| |||  ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  11663569 ttacagttccctttgtatttggaacttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacg 11663470  T
Q  187 tctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatca 286  Q
    |||||| |||| | ||||||| || |||||||| |||||||| ||||||||||||||||||||||   |||||||| ||| ||||||||| |||| ||||    
T  11663469 tctaacgtccaaatttatgtttcttagtgttggatttgatgccttaccttcccatgaaaagtcggctgattttattaaaactgagcctttgaggttatca 11663370  T
Q  287 tcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaa 386  Q
    |    |||  | ||||| |||||||| ||||||||||| || |||||||| | |||   ||||||||| || || ||||| || | ||| ||||| ||||    
T  11663369 ttattgcacatgttcttcaaattttcactctgcagttctggagcctcaagaaaattttgaatccgagaaaatgcgactttggcttgaataatcacagcaa 11663270  T
Q  387 taacatctggga-tgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataac 485  Q
     ||||||||||| |||| | |||||| |||||||  || || |||||||| || | |||||||||||| |||||| |||||||||||||||| || ||||    
T  11663269 caacatctgggattgctag-aattggctcttgaacaaggcgtaaagttgctacgaaagtgaaaacattgcttgcacgcaaaggaactttcaggaagtaac 11663171  T
Q  486 atgctagaaaagaagcagcagataccaaca 515  Q
    |||||| |||||||||||||||||||||||    
T  11663170 atgctataaaagaagcagcagataccaaca 11663141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 78 - 515
Target Start/End: Original strand, 11710015 - 11710452
Alignment:
Q  78 aataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacctt 177  Q
    |||||||  |||| ||||||||||| ||   ||| ||||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||||||||    
T  11710015 aataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccacctt 11710114  T
Q  178 ttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagccttta 277  Q
    ||||||| ||||||| ||||   ||||||| || |||||||| |||||||||||||||||||||||||||||||   |||||||| ||| ||||||  |     
T  11710115 ttgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcattaccttcccatgaaaagtcggctgattttattaaaactgagcccctg 11710214  T
Q  278 aggtcatcatcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatga 377  Q
    ||||  ||||   ||    | || |||||| |||| ||||  ||||| ||||||||||||| ||||   |||||||  || ||||||||||| | |||||    
T  11710215 aggttgtcattacagatgatgttattgaaactttcactctttagttctggtgcctcaaggaaattacatatccgagcaaatgcaacttttgcttgaatga 11710314  T
Q  378 tcactgcaataacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcag 477  Q
    |||| | ||||||||| || || | || ||||||  ||||||  || |  || |||||||||| ||||||||||||||||||||||||||||| ||| ||    
T  11710315 tcaccgtaataacatccggtatacctgtaattggcacttgaacaaggcctaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaattttaag 11710414  T
Q  478 aaaataacatgctagaaaagaagcagcagataccaaca 515  Q
     || |||||||||||||||||||||||||| |||||||    
T  11710415 gaagtaacatgctagaaaagaagcagcagacaccaaca 11710452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 112 - 515
Target Start/End: Original strand, 11673525 - 11673928
Alignment:
Q  112 ttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcctc 211  Q
    |||||||||||||||||| | ||  ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||| | ||||| | ||     
T  11673525 ttctccaagaattgttgctaagatggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt 11673624  T
Q  212 agtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatcatcgaagcattttttcttgaaatttt 311  Q
    |||||||| |||  |||||||| ||||||||||||||| |   |||  ||  | | |||||||||||||| |||||  ||||||   ||||| |||||||    
T  11673625 agtgttggctttattgcattactttcccatgaaaagtcagccgattcgataaagactgagcctttaaggttatcatttaagcatcggttcttaaaatttt 11673724  T
Q  312 ctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattgg 411  Q
    | || ||||||||  |||| |  || | ||||||||||| ||  || ||||||||||| | ||| ||||| |||||||||||||| || | || ||| ||    
T  11673725 cactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaatagg 11673824  T
Q  412 ttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagatacc 511  Q
     |||||||  || || || |||||||||| |||||||||||||||||||||||||||||||||||  || |||||  | ||||||||||| | ||| |||    
T  11673825 atcttgaacaaggcgtaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaactttcaagaagtaacagaccagaaaagaagccgaagacacc 11673924  T
Q  512 aaca 515  Q
    ||||    
T  11673925 aaca 11673928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 12093565 - 12093638
Alignment:
Q  110 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgccc 183  Q
    |||||||| ||||||| ||| |  | |||||||||||||||||||||||||||||||||||| | |||||||||    
T  12093565 acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagctatcttttgccc 12093638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 489
Target Start/End: Original strand, 11739337 - 11739716
Alignment:
Q  110 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcc 209  Q
    |||||||| ||||| | ||| | |||||||||||| ||||||||||||||||||||||| || | |||||| ||    |||||||  |   |||| || |    
T  11739337 acttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaatggctatcttttgaccgacactaacctttaagtttatctttc 11739436  T
Q  210 tcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggtcatcatcgaagcattttttcttgaaatt 309  Q
    | | |||||||||  ||  || |  ||||||||||||||| ||| | || ||| |||||||||| || |  |  ||||| |||||  | ||  |||||||    
T  11739437 ttattgttggtttcaatatatcatattcccatgaaaagtcagaagacttgattaaaattgagccattcaacttttcatcaaagcaagtctttctgaaatt 11739536  T
Q  310 ttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaatt 409  Q
    |   |||||||  || |||||||| ||||  |  ||||||||||| || ||||  ||||| | |||||||||| |||||||||| |||||| ||||||||    
T  11739537 tgaactctgcaactcaggtgcctcgaggaattccacaatccgagaaaatgcaatatttgcttgaatgatcactccaataacatcagggatggttgaaatt 11739636  T
Q  410 ggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgc 489  Q
    || ||||| || || || |  ||||||||||  ||||| | |||| | ||||| |||||||| ||||  || ||||||||    
T  11739637 ggatcttgcataagtcgtattgttgccacaaaggtgaatatattattcgcatgtaaaggaacattcaagaagtaacatgc 11739716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 11756370 - 11756309
Alignment:
Q  110 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagc 171  Q
    |||||||| ||||||| ||| |  | ||||||||||||||||||||||||||||||||||||    
T  11756370 acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc 11756309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 73 - 512
Target Start/End: Complemental strand, 13119 - 12680
Alignment:
Q  73 aagggaataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagcc 172  Q
    ||||||||||||  ||||  |||||||||||||   ||||||||||||||||||||| |  || |||||||| || |||||||||| ||| || ||||||    
T  13119 aagggaataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgcagatagcc 13020  T
Q  173 accttttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagc 272  Q
    |||||||| |||||||||||||| | | ||||  |||||| |||||| ||| ||||||| ||||||||||||||||| |   ||||||||||||||||||    
T  13019 accttttggccatgtctaacctcaaaatttatactcctcaatgttggctttaatgcattgccttcccatgaaaagtcagcggattttattgaaattgagc 12920  T
Q  273 ctttaaggtcatcatcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctc 372  Q
    |||| |||||| ||  |||||| |  ||||| |||||||  |||  ||  ||||| || | ||||| |  | |||| ||||  || |||||||| || |     
T  12919 ctttgaggtcaacacggaagcactcattcttcaaatttttactcaacaactccggggcattaaggaaaacagcaattcgagcaaatgcaactttagcttg 12820  T
Q  373 aatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaact 472  Q
    ||| ||| ||| ||||||||| || |||||||||||||| |||||||  ||   ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  12819 aataatcgctgtaataacatccggaatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaacattacttgcatgcaatggaact 12720  T
Q  473 ttcagaaaataacatgctagaaaagaagcagcagatacca 512  Q
    | ||  || |||||||| | |||||| ||| |||||||||    
T  12719 tccaagaagtaacatgccaaaaaagaggcaacagatacca 12680  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 326 - 513
Target Start/End: Complemental strand, 44811915 - 44811728
Alignment:
Q  326 ggtgcctcaaggagattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagac 425  Q
    |||||||||||||  || | |||||||| ||||||||||||||||| ||| | |||  ||||||| |||||||||  |  ||| || |||||||  || |    
T  44811915 ggtgcctcaaggaattttagaatccgagcgaacgcaacttttgcctgaataaccaccccaataacgtctgggatggatctaatcggatcttgaacaaggc 44811816  T
Q  426 gcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagataccaa 513  Q
    | |||||||| |||| ||||||||||||| |||||||||||||||| || |||||||| ||||||  ||| ||||||||||| |||||    
T  44811815 gtaaagttgctacaaaagtgaaaacattatttgcatgcaaaggaacgttaagaaaatagcatgctccaaacgaagcagcagagaccaa 44811728  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 44812126 - 44812055
Alignment:
Q  109 aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttg 180  Q
    ||||||||||||||||| ||  | ||||| |||||| ||||||||||||||||||||||| || ||||||||    
T  44812126 aacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttg 44812055  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 31291038 - 31291126
Alignment:
Q  87 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacc 175  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||  |  || |||||||||||||||||||||||||||||||| ||||||    
T  31291038 ttacagttaccttagttttataaacttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc 31291126  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 38151448 - 38151541
Alignment:
Q  401 cttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaa 494  Q
    |||| |||||| |||||||  || ||||||||||| |||| |||||||||||||||||||||||||||||| | ||  || |||||||||||||    
T  38151448 cttgtaattggctcttgaacaaggcgcaaagttgcaacaaaagtgaaaacattacttgcatgcaaaggaacatccaagaagtaacatgctagaa 38151541  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 27957851 - 27957923
Alignment:
Q  96 cctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat 168  Q
    |||||||||| ||||||||||||||||||||||| |  || ||| ||||||||||| ||||||||||||||||    
T  27957851 cctttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat 27957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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