View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6913_low_7 (Length: 501)
Name: NF6913_low_7
Description: NF6913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6913_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 26616044 - 26616520
Alignment:
| Q |
7 |
gagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaatnnnnnnnnnnnnnntaatagtattcccc |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
26616044 |
gagatcatattagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaataaaaaaataaaaaataatagtattccac |
26616143 |
T |
|
| Q |
107 |
attcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagnnnnnnnnncggttacaaaaatgttgatagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26616144 |
attcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagtttttttt-cggttacaaaaatgttgatagt |
26616242 |
T |
|
| Q |
207 |
cnnnnnnnaccactaaaataaatgttgataaaaataccctaacatttcttatttaaaaccaaatatagatgaagggaaattacgtaaatcacaatatgat |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616243 |
ctttttttaccactaaaataaatgttgataaaaataccctaacatttcttatttaaaaacaaatatagatgaagggaaattacgtaaatcacaatatgat |
26616342 |
T |
|
| Q |
307 |
tcaacatttaatttttgttctagctcttctcccatgtcaatannnnnnnncctcaacaagtatttcaacaaacgacgcaccaccatcgccaataacgatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616343 |
tcaacatttaatttttgttctagctcttctcccatgtcaata-tttttttcctcgacaagtatttcaacaaacgacgcaccaccatcgccaataacgatt |
26616441 |
T |
|
| Q |
407 |
gacgcatcctcctccaccataacccaacaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttac |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616442 |
gacgcatcctcctccaccataacccaacaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttac |
26616520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 26721972 - 26722448
Alignment:
| Q |
7 |
gagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaatnnnnnnnnnnnnnntaatagtattcccc |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
26721972 |
gagatcatattagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaataaaaaaataaaaaataatagtattccac |
26722071 |
T |
|
| Q |
107 |
attcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagnnnnnnnnncggttacaaaaatgttgatagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26722072 |
attcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagtttttttt-cggttacaaaaatgttgatagt |
26722170 |
T |
|
| Q |
207 |
cnnnnnnnaccactaaaataaatgttgataaaaataccctaacatttcttatttaaaaccaaatatagatgaagggaaattacgtaaatcacaatatgat |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722171 |
ctttttttaccactaaaataaatgttgataaaaataccctaacatttcttatttaaaaacaaatatagatgaagggaaattacgtaaatcacaatatgat |
26722270 |
T |
|
| Q |
307 |
tcaacatttaatttttgttctagctcttctcccatgtcaatannnnnnnncctcaacaagtatttcaacaaacgacgcaccaccatcgccaataacgatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722271 |
tcaacatttaatttttgttctagctcttctcccatgtcaata-tttttttcctcgacaagtatttcaacaaacgacgcaccaccatcgccaataacgatt |
26722369 |
T |
|
| Q |
407 |
gacgcatcctcctccaccataacccaacaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttac |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722370 |
gacgcatcctcctccaccataacccaacaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttac |
26722448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 653481 - 653548
Alignment:
| Q |
7 |
gagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatg |
74 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| | |||||| | |||||||||||||| ||||||| |
|
|
| T |
653481 |
gagatcatattagtggtagtatatataatgagtgagtgaatgtttctagttaagaaatatgagttatg |
653548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University