View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_10 (Length: 397)
Name: NF6914_high_10
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 5051032 - 5050845
Alignment:
| Q |
18 |
gaagcaactcctctgctgttatggccttccatgagagtcaatcaactattcaattagctagtaatcctttgtaccacccaattttatttgtgagtatgtg |
117 |
Q |
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| T |
5051032 |
gaagcaaatcctctgctgttatggccttccatgggagtcaatcaactattcaattagctagtaatcctttgtaccacccaattttatttgtgagtatgtg |
5050933 |
T |
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| Q |
118 |
ccgtttggttgcctcaagtcaattcatgtaacttttgtcaagcaaaccaaacattgtcatgggtttcatttcattagaaatatatata |
205 |
Q |
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| T |
5050932 |
ccgtttggttgcctcaagtcaattcatgtaacttttgtcaagcaaaccaaacattgtcatgggtttcatttcattagaaatatatata |
5050845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 5050742 - 5050627
Alignment:
| Q |
271 |
ttggcaaggaaatttggaccaaatttaaagaatgccattaccatgctctggggaatgtgatgaaaaggagaatcttccttttccggtttggggttgtcta |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5050742 |
ttggcaaggaaatttggaccaaatttaaagaatgccattaccatgctctggggaatgtgatgaaaaggagaatcttccttttccggtttggggttgtcta |
5050643 |
T |
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| Q |
371 |
catgttctctgttctt |
386 |
Q |
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| T |
5050642 |
catgttctctgttctt |
5050627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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