View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_14 (Length: 353)
Name: NF6914_high_14
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 54096326 - 54096648
Alignment:
| Q |
15 |
acatcaatgacgttttgttgcattactgatcaccaattttttgttaaaatgtttaaacgatttttcaacaatttttgatttaacccttgaacctcgacac |
114 |
Q |
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| T |
54096326 |
acatcaatgacgttttgttgcattactgatcaccaattttttgt---aatgtttaaacgatttttcaacaatttttaatttaacccttgaacctcgacac |
54096422 |
T |
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| Q |
115 |
caaagatcagaaccttaactctctgagataaccacacttgatcaaccaatacaacgagccgataatcgaagaccctcctcactnnnnnnnnnnnnnnnnn |
214 |
Q |
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| T |
54096423 |
caaagatcagaaccttaactctctgagataaccacacttgatcaaccaatacaacgagccgataatcgaagaccctcctcact-aaaaaatgtaaaaaaa |
54096521 |
T |
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| Q |
215 |
nnnnggcatgaagaaagcacaaaatagaagcgcttaggaataacgcagccaacagaaagaaaaggcacggatcaatgacatggcaataaatttaaattcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54096522 |
gaaaggcatgaagaaagcacaaaatagaagcgcttaggaataacgcagccaacagaaagaaaaggcacggatcaatgacatggcaataaatttaaattcc |
54096621 |
T |
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| Q |
315 |
cgcctaaatccctaccattggattgat |
341 |
Q |
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||||||||||||||||||||||||||| |
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| T |
54096622 |
cgcctaaatccctaccattggattgat |
54096648 |
T |
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