View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_17 (Length: 323)
Name: NF6914_high_17
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 31795922 - 31795622
Alignment:
| Q |
10 |
atggacatcattcaaaatccttctaaatatggtaaatacatactaaaaatttaattactatatacggaaattaagtacaagagttttatgcatacattca |
109 |
Q |
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| T |
31795922 |
atggacatcattcaaaatccttctaaatatggtaaatacatactaaaaatttaattactatatacggaaattaagtaaaggagttttatgcatacattca |
31795823 |
T |
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| Q |
110 |
atcatatcttattaagtagatatttgtaaagatattttataaattaacaatgtggcacgacacaaagacaaaacatgattcataattggacaaacatgta |
209 |
Q |
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| T |
31795822 |
atcatatcttattatgtagatatttgtaaagatattttataaattaataatgtggcacgacacaaagataaaacatgattcataattggataaatatgta |
31795723 |
T |
|
| Q |
210 |
acactattttatgttgtaaatatactgtactgatagtaatctcaactact-atcagtcacatacattctttactaggccccatataatcaccaatttgat |
308 |
Q |
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| T |
31795722 |
acactattttacgttgtaaatatactgtaccgatagtaatctcaactactaatcagtcacatacattctttactaggccccatataatcaccaatttgat |
31795623 |
T |
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| Q |
309 |
g |
309 |
Q |
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| T |
31795622 |
g |
31795622 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 12875693 - 12875726
Alignment:
| Q |
125 |
gtagatatttgtaaagatattttataaattaaca |
158 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
12875693 |
gtagatatttgtaaagatattttaaaaattaaca |
12875726 |
T |
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