View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_20 (Length: 289)
Name: NF6914_high_20
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 34338148 - 34338421
Alignment:
| Q |
1 |
actgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaacggtgtgatgaatgactacagtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34338148 |
actgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaaaggtgtgatgaatgactacagtcc |
34338247 |
T |
|
| Q |
101 |
attaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataacttacattcaaaaatatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338248 |
attaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataacttacattcaaaaatatttg |
34338347 |
T |
|
| Q |
201 |
aggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttcctgatg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34338348 |
aggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttcttgatg |
34338421 |
T |
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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 9072854 - 9072940
Alignment:
| Q |
175 |
atataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgcta |
261 |
Q |
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|||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||||||||||||||| | | || ||||||||| |
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| T |
9072854 |
atataacttacattcaaacaaatttgaggaagtcttccacccatatatataactgccattgcccaaccaaggtaagttccaatgcta |
9072940 |
T |
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