View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_21 (Length: 276)
Name: NF6914_high_21
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 14302062 - 14301799
Alignment:
| Q |
1 |
aatatttacactgttaatcaatcacactcatcaggggggaaaatatatagattaatttttatacactttcagcgtaannnnnnngcactgttaatctatc |
100 |
Q |
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| T |
14302062 |
aatatttacactgttaatcaatcacactcatcaggggggaaaatatatagattaatttttatacactttcagcgtaatttttttgcactgttaatctatc |
14301963 |
T |
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| Q |
101 |
acagtcatcatttttgagattgctgagaactgataacttgtttgcaataaataaccttaaacattaaagttttttcaagttcaactgagaaacttggctt |
200 |
Q |
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| T |
14301962 |
acagtcatcatttttgagattgctgagaactgataacttgtttgcaataaataaccttaaacattaaagttttttcaagttcaactgagaaacttggctt |
14301863 |
T |
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| Q |
201 |
gttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
264 |
Q |
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| T |
14301862 |
gttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
14301799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 14280169 - 14280036
Alignment:
| Q |
126 |
agaactgataacttgtttgcaataaataaccttaaacattaaagttttttcaagttcaactgagaaactt-ggcttgttttgataccaatttcaaaggtg |
224 |
Q |
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| T |
14280169 |
agaactgataacttgtttgcaataaatagccttaaacattcaagttctttcaa------ctgagaaactttggcttgttttgataccaatttcaaaggtg |
14280076 |
T |
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| Q |
225 |
atgcgagaagggagagtagtgcaaagtggaaagtatgatg |
264 |
Q |
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| T |
14280075 |
atgcgagaagggagagtagtgcaaagtggaaagtatgatg |
14280036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 14318292 - 14318222
Alignment:
| Q |
194 |
ttggcttgttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
264 |
Q |
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| T |
14318292 |
ttggcttattttgataccaactttaaaggtgatgcgtgaagggagagtagtacaaagtggaaagtatgatg |
14318222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 77
Target Start/End: Complemental strand, 14302093 - 14302063
Alignment:
| Q |
47 |
atagattaatttttatacactttcagcgtaa |
77 |
Q |
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| T |
14302093 |
atagattaatttttatacactttcagcgtaa |
14302063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 25883697 - 25883642
Alignment:
| Q |
209 |
accaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
264 |
Q |
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| T |
25883697 |
accaactttaaaggtgatgcgtgaagggagagtagtgcaaagtggaaagtatgatg |
25883642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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