View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_24 (Length: 264)
Name: NF6914_high_24
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 25491572 - 25491830
Alignment:
| Q |
1 |
tcatgttgattacagaagtatgcatggaagtgaggaatttgcaaggtttctttaacattaactttctttttccttatacctttaaa-ctcagaactttca |
99 |
Q |
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| T |
25491572 |
tcatgttgattacagaagtatgcatggaagtgaggaatttgcaaggtttctttaacattaactgtcttttgccatatacctttaaaactcaggacttcca |
25491671 |
T |
|
| Q |
100 |
taatgacacaatccat--agttatttacaatgtcatttctgaaaccatttttctaggtatctaagaatcgtagaagagctgcaaagagtggaaataatga |
197 |
Q |
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| T |
25491672 |
ttatgacacaatccatctagttatttacaatgttacttctgaaaccatttttctaggtatctaagaatcgtggaagagctgcaaagagtggaaataatgc |
25491771 |
T |
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| Q |
198 |
atttatcaagagaagaaacgattgctttctttattaatctatataatatgatgtccatc |
256 |
Q |
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| T |
25491772 |
atttatcaagagaagaaacgattgctttctttattaatctatataatatgatgaccatc |
25491830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 33184027 - 33184132
Alignment:
| Q |
151 |
taggtatctaagaatcgtagaagagctgcaaagagtggaaataatgaatttatcaagagaagaaacgattgctttctttattaatctatataatatgatg |
250 |
Q |
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| T |
33184027 |
taggtatctgagaatagttgaagagctccaaagagttgaaatattggatttgtctagagaagaaaagcttgctttctttattaatctttataacatgatg |
33184126 |
T |
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| Q |
251 |
tccatc |
256 |
Q |
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||||| |
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| T |
33184127 |
accatc |
33184132 |
T |
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