View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_30 (Length: 247)
Name: NF6914_high_30
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 1550472 - 1550244
Alignment:
| Q |
15 |
gacatccacatcaagaatttcccctaacaattcagaaaaatcaaaccaaagttgcatttacatctttaactccttcaaatgtcttctagtaaattcgaat |
114 |
Q |
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| T |
1550472 |
gacatccacatcaagaatttcccctaacaattcagaaaaatcaaaccaaagttgcatttacatctttaactccttcaaatgtcttctagtgaattcgaat |
1550373 |
T |
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| Q |
115 |
ccctgccatatgtcaaaggagtcataaatttcaattcagttcatagtacatattatcaaaaacctcaaaaatgattctaacatattgtatttcgacaagc |
214 |
Q |
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| T |
1550372 |
ccctgccatatgtcaaaggagtcataaatttcaactcagttcatagtacatattatcaaaaacctcaaaaatgattctaacatattatatttcgacaagc |
1550273 |
T |
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| Q |
215 |
aagactgcaccaacactttcaagtaacta |
243 |
Q |
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| T |
1550272 |
aagactgcaccaacactttcaagtaacta |
1550244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 1554205 - 1554160
Alignment:
| Q |
97 |
cttctagtaaattcgaatccctgccatatgtcaaaggagtcataaa |
142 |
Q |
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| T |
1554205 |
cttctagtgaatttgaatccctgccatatgtcaaaggagtcataaa |
1554160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 1491790 - 1491735
Alignment:
| Q |
125 |
tgtcaaaggagtcataaatttcaattcagttcatagtacatattatcaaaaacctc |
180 |
Q |
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| T |
1491790 |
tgtcaaaggagtcataaattttgattcagttcataatacaaattatgaaaaacctc |
1491735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 1512906 - 1512851
Alignment:
| Q |
125 |
tgtcaaaggagtcataaatttcaattcagttcatagtacatattatcaaaaacctc |
180 |
Q |
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| T |
1512906 |
tgtcaaaggcgtcataaattttgattcagttcataatacaaattattaaaaacctc |
1512851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 1749903 - 1749938
Alignment:
| Q |
124 |
atgtcaaaggagtcataaatttcaattcagttcata |
159 |
Q |
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| T |
1749903 |
atgtcaaaagagtcataaatttcaattcagttcata |
1749938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 517056 - 517010
Alignment:
| Q |
41 |
acaattcagaaaaatcaaaccaaagttgcatttacatctttaactcc |
87 |
Q |
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| T |
517056 |
acaattcagcaaaaccaaaccaaagttgcatttacatcttaaactcc |
517010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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