View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_high_34 (Length: 242)

Name: NF6914_high_34
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_high_34
NF6914_high_34
[»] chr1 (4 HSPs)
chr1 (7-95)||(1842492-1842580)
chr1 (162-242)||(1868232-1868312)
chr1 (13-95)||(1868083-1868165)
chr1 (164-242)||(1842625-1842703)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 1842492 - 1842580
Alignment:
Q  7 gttgggacattctcgtacttaatatatcataagaggaaattcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt 95  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1842492 gttgggacattctcgtacttaatataccataaaaggaaattcatcaaaatgaaagagaaattctttgagcagaatggtggtctgatttt 1842580  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 1868232 - 1868312
Alignment:
Q  162 tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagagtttaatcattggcaaaggtggttt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1868232 tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttt 1868312  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 1868083 - 1868165
Alignment:
Q  13 acattctcgtacttaatatatcataagaggaaattcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt 95  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1868083 acattctcgtacttaatgtaccataagaggaaattcatcaaaatgaaagagaaattcttcgaacagaatggtggtttgatttt 1868165  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 1842625 - 1842703
Alignment:
Q  164 ctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagagtttaatcattggcaaaggtggttt 242  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||    
T  1842625 ctaaaatattcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttt 1842703  T

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