View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_5 (Length: 484)
Name: NF6914_high_5
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Original strand, 52262769 - 52263243
Alignment:
| Q |
20 |
agatacatatcactaattactgccccctctactcttctattctattctat------catgacctccactttcaaccttccaggttgattcttcttctatc |
113 |
Q |
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| T |
52262769 |
agatacatatcactaattactgccccctctactcttttattctattctattcttatcatgaactccactttcaaccttccaggtttgttcttcttctatc |
52262868 |
T |
|
| Q |
114 |
tacacccc-atcttttttacttcactgtaaactgtaaatttt-------------acaacttttgttgcaggtggagctcaaaatcaaagagatttagaa |
199 |
Q |
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| T |
52262869 |
cacacccccatcttttttacttcactgtaaactgtaaattttacaatttttttttacaacttttgtttcaggtggagctcaaaatcaaagagattcagat |
52262968 |
T |
|
| Q |
200 |
aaaggaacgatgatgacaccaacacagaacccactttccgaaatatcgccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaact |
299 |
Q |
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| T |
52262969 |
aaaggaacgatgatgacaccaacccagaacccactttccgaaatatcaccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaact |
52263068 |
T |
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| Q |
300 |
caggaaaacggatcgatcaagcagggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263069 |
caggaaaacggatcgatcaagcagggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtga |
52263168 |
T |
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| Q |
400 |
tgttggtgctgtgagacagatccttcttgatattgattctcaaataatgggtactttgagtggtgatgatgatgt |
474 |
Q |
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| T |
52263169 |
tgttggtgctgtgagacagatccttcttgatattgattctcaaataatgggtactttgagtggtgatgatgatgt |
52263243 |
T |
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