View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6914_high_6 (Length: 463)
Name: NF6914_high_6
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 38121154 - 38120706
Alignment:
| Q |
14 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgtcgtgcacagcgtgtatttgccttttccg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38121154 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccg |
38121055 |
T |
|
| Q |
114 |
catatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121054 |
catatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagatt |
38120955 |
T |
|
| Q |
214 |
ctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120954 |
ctgctggtcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctca |
38120855 |
T |
|
| Q |
314 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatg---atgaagattgtggttcagttctttctctgctgaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
38120854 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaag |
38120755 |
T |
|
| Q |
411 |
tgaatctctatgaaatttgtagttaataagtttacgctgatgtccatct |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
38120754 |
tgaatctctatgaaatttgtagttaataagtttacactgttgtccatct |
38120706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 38608969 - 38609400
Alignment:
| Q |
14 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgtcgtgcacagcgtgtatttgccttttccg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
38608969 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccg |
38609068 |
T |
|
| Q |
114 |
catatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | ||| ||| ||||| |
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|
| T |
38609069 |
catatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagatt |
38609168 |
T |
|
| Q |
214 |
ctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctca |
313 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
38609169 |
ctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctca |
38609268 |
T |
|
| Q |
314 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
38609269 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtga |
38609368 |
T |
|
| Q |
414 |
atctctatgaaatttgtagttaataagtttac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38609369 |
atctctatgaaatttgtagttaataagtttac |
38609400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 38793752 - 38794183
Alignment:
| Q |
14 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgtcgtgcacagcgtgtatttgccttttccg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
38793752 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccg |
38793851 |
T |
|
| Q |
114 |
catatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | ||| ||| ||||| |
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|
| T |
38793852 |
catatcaatcctattgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagatt |
38793951 |
T |
|
| Q |
214 |
ctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctca |
313 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
38793952 |
ctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctca |
38794051 |
T |
|
| Q |
314 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
38794052 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtga |
38794151 |
T |
|
| Q |
414 |
atctctatgaaatttgtagttaataagtttac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38794152 |
atctctatgaaatttgtagttaataagtttac |
38794183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
291 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtg |
387 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
388 |
gttcagttctttct |
401 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 38287457 - 38287498
Alignment:
| Q |
394 |
ttctttctctgctgaagtgaatctctatgaaatttgtagtta |
435 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |
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|
| T |
38287457 |
ttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 445
Target Start/End: Complemental strand, 28730728 - 28730297
Alignment:
| Q |
14 |
gacatcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgtcgtgcacagcgtgtatttgccttttccg |
113 |
Q |
| |
|
||||| ||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||| || ||||| || |||||||||||||||||| |
|
|
| T |
28730728 |
gacattagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccg |
28730629 |
T |
|
| Q |
114 |
catatcaatcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagatt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28730628 |
catatcaatcctattgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagatt |
28730529 |
T |
|
| Q |
214 |
ctgctggtcaggccacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctca |
313 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
28730528 |
ctgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctca |
28730429 |
T |
|
| Q |
314 |
ggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtga |
413 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||| | || | |||||||||||||||||| | |
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|
| T |
28730428 |
ggtcaggccaatgtttgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaa |
28730329 |
T |
|
| Q |
414 |
atctctatgaaatttgtagttaataagtttac |
445 |
Q |
| |
|
| || ||||||||||||||||||||||||||| |
|
|
| T |
28730328 |
aactatatgaaatttgtagttaataagtttac |
28730297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 33078483 - 33078557
Alignment:
| Q |
333 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtggttcagttctttctctg |
404 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg |
33078557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 18224426 - 18224363
Alignment:
| Q |
62 |
cgtcatccgcaatgtgaagattgtcgtgcacagcgtgtatttgccttttccgcatatcaatcct |
125 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||| |||||| |
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|
| T |
18224426 |
cgtcatccgcaacgtcaagatcgtcgtgcacagtgtgtacttgccatttccacatattaatcct |
18224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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