View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_high_9 (Length: 410)
Name: NF6914_high_9
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 18092765 - 18092947
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092765 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
18092864 |
T |
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| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
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| T |
18092865 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
18092947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 31468840 - 31468997
Alignment:
| Q |
22 |
tcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccac |
121 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||||||| ||||||||||| ||| | || ||| | | | |
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| T |
31468840 |
tcagttcatcattgtctccgtgaaggaaatcaatgtgcggattacttggcaaaattgggagcttcatcgaatgaagagtgtttagtacatgcctccgccc |
31468939 |
T |
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| Q |
122 |
ctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagc |
179 |
Q |
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|||| || ||| | | |||| ||| | ||||| ||||||||||||||||||||||| |
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| T |
31468940 |
ctcaagaacttcttgttttgcttcagatggatgcaataggaactctgtttcctagagc |
31468997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37152439 - 37152621
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
37152439 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaattaaaagt |
37152538 |
T |
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| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
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||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37152539 |
gcttatttcacgccacaccacctcaagagctcttggatttaattcgctttgatgccataggaactctgtttcctagagcatag |
37152621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 21789236 - 21789418
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||||| || |
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| T |
21789236 |
ctcttatctgtgcataatttttccgttcatcattgtctccgtgaaggaaaccaatgcgcggattacttggccaagttgggagcttcatcaaatgaagtgt |
21789335 |
T |
|
| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
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| T |
21789336 |
gcttatttcatgccaccccccctcatgagcttctggatttaattcgctttgatgctataggaactctatttcctagagcatag |
21789418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 39464243 - 39464425
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||| |
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| T |
39464243 |
ctcttatctgtgcataatttttccgttcatcattgtctccgtgaaggaaaccaatgcgcggattacttggctaagttgggagcttcatcaaatgaagagt |
39464342 |
T |
|
| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
| |
|
||||||| || ||||| |||||| | |||||| ||||||| |||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
39464343 |
gcttatttcatgccaccccacctaaagagcttatggatttaattcgccttgatgctataggaactctatttcctagagcatag |
39464425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 15462692 - 15462510
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| ||| ||||||| |||||||||| |
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| T |
15462692 |
ctcttatctgcgcataatttttccgttcatcattgtctccgtgaaggaaatcaatgcgcggactacttgaccaagttgggatcttcatcaaatgaagagt |
15462593 |
T |
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| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
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||||| | || ||| | || |||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
15462592 |
gcttagttcatgcctccccccctcatgagcttcttgatttaattcgttttgatgctataggaactctatttcctagagcatag |
15462510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 42383487 - 42383339
Alignment:
| Q |
35 |
gtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccacctcatgagctttt |
134 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383487 |
gtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccacctcatgagctttt |
42383388 |
T |
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| Q |
135 |
ggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383387 |
ggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
42383339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42401300 - 42401262
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctc |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42401300 |
ctcttatctgtgcataatttttcagttcatcattgtctc |
42401262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 16324481 - 16324566
Alignment:
| Q |
13 |
cataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaaga |
98 |
Q |
| |
|
|||||||| ||||| |||||||| |||| || || || |||||||||||||| ||||| || || ||||| ||||| |||||||| |
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| T |
16324481 |
cataatttctcagtctatcattgtttccgggaagggaatcaatgcgcggactacttggcgaaattgggagcgtcatcgaatgaaga |
16324566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 247 - 396
Target Start/End: Original strand, 30122520 - 30122669
Alignment:
| Q |
247 |
caatacattattatggatggtggggacaatgacaatggaaggaaacaaattgctaatattaacatagaaaatacataaaatactataagagacaacatga |
346 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30122520 |
caatacattattatggagggtggggacaatgacaatggaaggaaacaaattgctaatattaacataaaaaatacataaaatactataagagacaacatga |
30122619 |
T |
|
| Q |
347 |
tgatgaaataagataaagattatgaagttcatgtctactcccaatgatgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
30122620 |
tgatgaaataagataaagattatgaagttcatgtctactcccaattatgt |
30122669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2961233 - 2961410
Alignment:
| Q |
1 |
ctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagt |
100 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| |||| |||||| |||||||||| |
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| T |
2961233 |
ctcttatctgcgcataacttttccgttcatcattgtctctgtgaaggaaaccaatgtgcggactacttggccaagttgggagattcatcgaatgaagagt |
2961332 |
T |
|
| Q |
101 |
gcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagc |
179 |
Q |
| |
|
||||| | || ||| | || |||||||||||| | | ||| || | |||||||| ||||||||||| ||||||||||| |
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| T |
2961333 |
gcttaattcatgcctc-ccccctcatgagcttcttgttttaatctgttttgatgctataggaactctatttcctagagc |
2961410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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