View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_10 (Length: 459)

Name: NF6914_low_10
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_10
NF6914_low_10
[»] chr1 (31 HSPs)
chr1 (10-446)||(9298407-9298843)
chr1 (301-426)||(424304-424430)
chr1 (301-427)||(33487042-33487169)
chr1 (301-427)||(12871603-12871730)
chr1 (232-371)||(32878621-32878761)
chr1 (301-424)||(3232770-3232894)
chr1 (301-426)||(14265266-14265392)
chr1 (237-426)||(29205203-29205393)
chr1 (301-426)||(32784090-32784216)
chr1 (304-426)||(27534684-27534807)
chr1 (251-426)||(33125818-33125994)
chr1 (301-426)||(7995573-7995699)
chr1 (346-424)||(28399336-28399414)
chr1 (301-424)||(28678145-28678269)
chr1 (302-426)||(42490876-42491001)
chr1 (337-426)||(44517167-44517255)
chr1 (334-426)||(4882372-4882463)
chr1 (334-426)||(10627017-10627108)
chr1 (305-427)||(45193638-45193761)
chr1 (301-426)||(20411555-20411681)
chr1 (364-427)||(45425484-45425547)
chr1 (301-421)||(18343596-18343717)
chr1 (301-426)||(42276339-42276463)
chr1 (346-427)||(45750507-45750587)
chr1 (346-426)||(29726609-29726688)
chr1 (346-426)||(37822358-37822437)
chr1 (386-426)||(50107927-50107967)
chr1 (304-426)||(17347584-17347705)
chr1 (392-426)||(15391265-15391299)
chr1 (340-426)||(51418037-51418121)
chr1 (362-419)||(34899025-34899082)
[»] chr7 (37 HSPs)
chr7 (238-426)||(21954831-21955020)
chr7 (276-426)||(39707248-39707398)
chr7 (301-426)||(28664925-28665051)
chr7 (301-426)||(9785299-9785425)
chr7 (303-426)||(45482048-45482172)
chr7 (237-427)||(10574299-10574490)
chr7 (304-426)||(36579325-36579448)
chr7 (301-426)||(22747521-22747646)
chr7 (301-426)||(45457569-45457695)
chr7 (300-426)||(32740733-32740861)
chr7 (301-426)||(5684347-5684473)
chr7 (301-426)||(5709397-5709523)
chr7 (304-426)||(17509217-17509339)
chr7 (304-426)||(17543875-17543997)
chr7 (301-426)||(46026042-46026168)
chr7 (337-427)||(10094461-10094550)
chr7 (304-426)||(11833003-11833127)
chr7 (337-426)||(14657834-14657924)
chr7 (301-426)||(21603445-21603570)
chr7 (302-426)||(42603782-42603907)
chr7 (277-417)||(29352205-29352345)
chr7 (300-427)||(39532987-39533115)
chr7 (301-426)||(27535438-27535566)
chr7 (301-426)||(41287939-41288066)
chr7 (301-426)||(1281150-1281276)
chr7 (301-426)||(17473736-17473862)
chr7 (301-426)||(17579352-17579478)
chr7 (301-427)||(48304405-48304534)
chr7 (301-426)||(3266364-3266496)
chr7 (346-422)||(15674629-15674704)
chr7 (346-424)||(21990691-21990768)
chr7 (339-426)||(24320236-24320322)
chr7 (337-427)||(2622612-2622701)
chr7 (392-426)||(36719565-36719599)
chr7 (346-420)||(42644705-42644778)
chr7 (303-418)||(4028168-4028281)
chr7 (334-426)||(43847087-43847178)
[»] chr4 (40 HSPs)
chr4 (276-426)||(12717130-12717280)
chr4 (232-426)||(22049417-22049611)
chr4 (237-426)||(22757015-22757202)
chr4 (334-426)||(6881973-6882064)
chr4 (301-427)||(7060306-7060433)
chr4 (297-426)||(20399916-20400046)
chr4 (301-426)||(27394812-27394938)
chr4 (301-426)||(29268790-29268916)
chr4 (301-426)||(44757055-44757181)
chr4 (304-426)||(13965545-13965668)
chr4 (301-427)||(24825631-24825758)
chr4 (335-426)||(50801235-50801325)
chr4 (302-426)||(5814330-5814455)
chr4 (276-411)||(3159000-3159136)
chr4 (301-426)||(6911662-6911788)
chr4 (301-426)||(43244394-43244520)
chr4 (301-421)||(478030-478150)
chr4 (301-424)||(24568728-24568852)
chr4 (334-426)||(43493300-43493391)
chr4 (301-426)||(394287-394413)
chr4 (301-426)||(7861219-7861344)
chr4 (301-426)||(30202020-30202146)
chr4 (243-426)||(25658091-25658275)
chr4 (301-426)||(24100121-24100249)
chr4 (301-427)||(26742475-26742602)
chr4 (301-422)||(8712512-8712634)
chr4 (306-426)||(7083829-7083950)
chr4 (301-426)||(42197535-42197662)
chr4 (301-379)||(31521964-31522044)
chr4 (301-422)||(51152107-51152228)
chr4 (301-426)||(11210326-11210452)
chr4 (347-422)||(26674402-26674476)
chr4 (348-410)||(27090755-27090817)
chr4 (392-426)||(36124362-36124396)
chr4 (392-426)||(38944161-38944195)
chr4 (301-427)||(39837576-39837704)
chr4 (301-422)||(626566-626686)
chr4 (364-424)||(3880616-3880676)
chr4 (394-426)||(20887769-20887801)
chr4 (386-426)||(51958420-51958460)
[»] chr2 (36 HSPs)
chr2 (276-424)||(17767566-17767715)
chr2 (301-426)||(27095687-27095813)
chr2 (301-427)||(44942267-44942394)
chr2 (301-426)||(20561145-20561271)
chr2 (301-426)||(22597117-22597243)
chr2 (301-426)||(43474141-43474267)
chr2 (301-426)||(5754270-5754396)
chr2 (301-426)||(33012059-33012185)
chr2 (302-426)||(25067835-25067960)
chr2 (303-418)||(11798537-11798653)
chr2 (301-426)||(12704669-12704795)
chr2 (301-422)||(15919856-15919977)
chr2 (346-424)||(6431402-6431480)
chr2 (336-422)||(13740677-13740762)
chr2 (301-426)||(11937871-11937998)
chr2 (301-426)||(38535318-38535444)
chr2 (364-426)||(11581141-11581203)
chr2 (334-428)||(34416772-34416865)
chr2 (346-424)||(35333534-35333611)
chr2 (334-426)||(4739346-4739437)
chr2 (297-426)||(4604320-4604450)
chr2 (301-426)||(9978682-9978808)
chr2 (301-426)||(32015202-32015332)
chr2 (337-426)||(4426671-4426759)
chr2 (304-427)||(31908828-31908952)
chr2 (337-426)||(32314462-32314550)
chr2 (301-379)||(17268183-17268263)
chr2 (392-427)||(10287018-10287053)
chr2 (392-427)||(41797668-41797703)
chr2 (384-422)||(17792540-17792578)
chr2 (301-426)||(18089409-18089531)
chr2 (393-426)||(12891132-12891165)
chr2 (349-418)||(13879027-13879095)
chr2 (349-418)||(14019152-14019220)
chr2 (301-419)||(9689993-9690112)
chr2 (277-329)||(17055158-17055210)
[»] scaffold0312 (1 HSPs)
scaffold0312 (301-426)||(6119-6245)
[»] chr3 (35 HSPs)
chr3 (278-426)||(106056-106206)
chr3 (301-426)||(36691820-36691946)
chr3 (301-426)||(31270308-31270434)
chr3 (301-426)||(11819065-11819191)
chr3 (301-425)||(13701994-13702119)
chr3 (301-424)||(53155453-53155577)
chr3 (347-426)||(2147756-2147835)
chr3 (301-426)||(3456925-3457051)
chr3 (301-426)||(48652461-48652587)
chr3 (238-426)||(32080775-32080965)
chr3 (346-426)||(35174733-35174812)
chr3 (337-425)||(54239040-54239127)
chr3 (301-426)||(31462767-31462893)
chr3 (301-426)||(34960879-34961005)
chr3 (301-426)||(36624715-36624841)
chr3 (301-426)||(48400881-48401007)
chr3 (387-427)||(24520706-24520746)
chr3 (346-426)||(41868315-41868394)
chr3 (364-424)||(47733900-47733960)
chr3 (346-426)||(49628108-49628187)
chr3 (301-426)||(14585444-14585570)
chr3 (346-427)||(22484994-22485074)
chr3 (301-426)||(38527245-38527371)
chr3 (302-426)||(40013293-40013421)
chr3 (364-426)||(4219226-4219288)
chr3 (392-426)||(33637477-33637511)
chr3 (346-424)||(40883891-40883968)
chr3 (362-427)||(40401521-40401586)
chr3 (334-426)||(55090604-55090695)
chr3 (349-427)||(39610244-39610321)
chr3 (296-338)||(43839601-43839643)
chr3 (301-426)||(4206532-4206658)
chr3 (385-426)||(5327497-5327538)
chr3 (392-425)||(34103739-34103772)
chr3 (301-422)||(30156306-30156428)
[»] chr8 (32 HSPs)
chr8 (276-426)||(2968486-2968640)
chr8 (302-427)||(14600718-14600844)
chr8 (336-426)||(31308167-31308256)
chr8 (334-424)||(32778973-32779063)
chr8 (245-365)||(13576257-13576378)
chr8 (301-426)||(37612635-37612761)
chr8 (301-426)||(30026901-30027027)
chr8 (300-427)||(10338842-10338970)
chr8 (246-338)||(25939757-25939848)
chr8 (302-426)||(9501572-9501698)
chr8 (273-427)||(7281600-7281757)
chr8 (299-426)||(2234491-2234619)
chr8 (243-426)||(30039358-30039536)
chr8 (346-427)||(39067709-39067789)
chr8 (301-426)||(24791189-24791315)
chr8 (301-426)||(31407769-31407895)
chr8 (301-426)||(41361714-41361840)
chr8 (301-426)||(2025230-2025356)
chr8 (304-426)||(3204777-3204899)
chr8 (301-426)||(11161864-11161990)
chr8 (297-426)||(24699808-24699940)
chr8 (301-424)||(1810243-1810366)
chr8 (337-426)||(37128507-37128595)
chr8 (301-426)||(10147928-10148055)
chr8 (301-426)||(12329608-12329735)
chr8 (346-422)||(15288823-15288898)
chr8 (346-422)||(15469192-15469267)
chr8 (340-426)||(4757188-4757273)
chr8 (392-426)||(7579876-7579910)
chr8 (304-427)||(10334159-10334284)
chr8 (384-426)||(13576208-13576250)
chr8 (337-426)||(23971117-23971203)
[»] scaffold0155 (1 HSPs)
scaffold0155 (302-419)||(35065-35185)
[»] chr6 (14 HSPs)
chr6 (301-426)||(6419871-6419997)
chr6 (304-426)||(14783184-14783307)
chr6 (301-426)||(12481383-12481509)
chr6 (301-426)||(15590092-15590218)
chr6 (301-426)||(21507821-21507947)
chr6 (302-426)||(23654233-23654358)
chr6 (301-426)||(4921894-4922021)
chr6 (301-426)||(2304823-2304949)
chr6 (297-426)||(31937433-31937561)
chr6 (301-426)||(8693670-8693799)
chr6 (301-426)||(19402821-19402947)
chr6 (348-410)||(2488169-2488231)
chr6 (394-426)||(6296262-6296294)
chr6 (394-426)||(6303072-6303104)
[»] chr5 (25 HSPs)
chr5 (301-426)||(17331310-17331436)
chr5 (303-426)||(17699537-17699661)
chr5 (271-424)||(25961878-25962033)
chr5 (301-427)||(29097771-29097898)
chr5 (302-426)||(178119-178244)
chr5 (334-426)||(39179841-39179932)
chr5 (302-424)||(12439649-12439771)
chr5 (301-418)||(43493854-43493972)
chr5 (301-426)||(6281026-6281152)
chr5 (301-426)||(28040611-28040737)
chr5 (301-426)||(33164481-33164607)
chr5 (304-426)||(6635234-6635358)
chr5 (244-426)||(17096252-17096432)
chr5 (301-424)||(32347729-32347854)
chr5 (301-427)||(27241046-27241173)
chr5 (347-426)||(3740387-3740465)
chr5 (337-426)||(17687225-17687313)
chr5 (304-427)||(34431045-34431169)
chr5 (301-421)||(39531422-39531540)
chr5 (301-427)||(20483168-20483295)
chr5 (346-426)||(23882129-23882208)
chr5 (347-426)||(12891706-12891784)
chr5 (304-356)||(11824917-11824970)
chr5 (341-426)||(18653806-18653890)
chr5 (297-359)||(981104-981168)
[»] scaffold1379 (2 HSPs)
scaffold1379 (234-426)||(1099-1292)
scaffold1379 (346-426)||(4-83)
[»] scaffold0294 (1 HSPs)
scaffold0294 (297-427)||(4079-4209)
[»] scaffold0536 (1 HSPs)
scaffold0536 (301-426)||(2882-3010)
[»] scaffold0321 (1 HSPs)
scaffold0321 (334-426)||(7137-7228)
[»] scaffold0056 (1 HSPs)
scaffold0056 (303-427)||(74148-74273)
[»] scaffold0432 (1 HSPs)
scaffold0432 (301-419)||(2438-2555)
[»] scaffold1350 (1 HSPs)
scaffold1350 (384-426)||(1640-1682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (305-426)||(404271-404393)
[»] scaffold0007 (1 HSPs)
scaffold0007 (363-427)||(202062-202126)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 9298843 - 9298407
Alignment:
Q  10 aagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatcttcaagtacatgtttcaacaaaatgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9298843 aagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatctacaagtacatgtttcaacaaaatgttttt 9298744  T
Q  110 gatcgattaaaattcacactgagtcctccaaatttacgagacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatc 209  Q
    ||| |||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9298743 gattgattaaaattcatagtgaatcctccaaatttacgatacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatc 9298644  T
Q  210 acttaattttaatatcaacacctttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgattt 309  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  9298643 atttaattttaatatcaacacctttttctctcgcttctcttcttctcaaaccttaactgtcggccatttcttcttcttgtctattgaagaagggtgattt 9298544  T
Q  310 agggtcaattttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttattt 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||    
T  9298543 agggtcaattttgaaccaaagtcaccctccgagttgtttttccttctatcctagttaaataattgatttccacgtattttaagttttctttcgtttgttt 9298444  T
Q  410 ttgtgatttcgtcgtcttgtactctgcttgttttgat 446  Q
    |||||||||| | ||||||||||||||||||||||||    
T  9298443 ttgtgatttcattgtcttgtactctgcttgttttgat 9298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 424430 - 424304
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  424430 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 424332  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  424331 ttcgtttgtttttgtgatttcgtcgtct 424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 33487169 - 33487042
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||  ||||||| || ||||||| | |||||    
T  33487169 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc-atatattttatgctttct 33487071  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||||||||||||||||||||    
T  33487070 ttcgtttgtttttgtgatttcgtcgtctt 33487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 12871603 - 12871730
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| |||||| || ||||| |||  ||||| ||||||| |  |||||| ||||||||    
T  12871603 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttc-acatattttcagttttct 12871701  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||||||||||||||||||||    
T  12871702 ttcgtttgtttttgtgatttcgtcgtctt 12871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 32878621 - 32878761
Alignment:
Q  232 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 331  Q
    |||||||||| | ||||| ||||||||||  ||||||||  || ||||||||| || |||||  |||| |||||||||||||| |||||||| ||||| |    
T  32878621 tttttctctctcctctctccttctcaaactctaaccgtcacccctttcttcttcttatctatcaaagatgggtgatttagggttaattttgacccaaaat 32878720  T
Q  332 ca-ccctccgagttatttttccttctatccaaattaaataa 371  Q
    || || |||||||| ||||||| ||||||| ||||||||||    
T  32878721 catccttccgagttgtttttccctctatcctaattaaataa 32878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 424
Target Start/End: Original strand, 3232770 - 3232894
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  3232770 gggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgattt-cacatattttctgttttct 3232868  T
Q  399 ttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||| ||||||||||||||||||    
T  3232869 ttcgtttgtttttgtgatttcgtcgt 3232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 14265266 - 14265392
Alignment:
Q  301 gggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  14265266 gggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttctgttttct 14265364  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    | ||| | ||||||||||||||||||||    
T  14265365 tacgtatgtttttgtgatttcgtcgtct 14265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 426
Target Start/End: Original strand, 29205203 - 29205393
Alignment:
Q  237 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 335  Q
    ||||| ||||||| ||||||||||| || |||||| || ||||||| | || |   ||  ||| ||||||||||||||||||||||| |||||  |||||    
T  29205203 ctctctcttctctccttctcaaaccctagccgtcgcccttttcttcgtcttcttctttttagacgggtgatttagggtcaattttgacccaaaaatcacc 29205302  T
Q  336 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    | |  || || ||||||||||||||  |||| ||||| ||||||| || ||||||  ||||||||| |||| ||||||||||||||||||||    
T  29205303 ccttggaattgtttttccttctatcataattgaataagtgatttc-atatattttctgttttcttttgtttgtttttgtgatttcgtcgtct 29205393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 32784090 - 32784216
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||  ||| ||||| ||||||| |  ||||||  |||||||    
T  32784090 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttc-acatattttctgttttct 32784188  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||| ||||||||||||||||||||    
T  32784189 tttgtttgtttttgtgatttcgtcgtct 32784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 27534684 - 27534807
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||||||||||||||| |||||  ||| |||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  ||||||||||    
T  27534684 tgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttctttc 27534782  T
Q  402 gtttatttttgtgatttcgtcgtct 426  Q
    |||| ||||||||||||||||||||    
T  27534783 gtttgtttttgtgatttcgtcgtct 27534807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 426
Target Start/End: Complemental strand, 33125994 - 33125818
Alignment:
Q  251 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccgagttatttt 349  Q
    ||||||||||||||  ||||   ||||||||||| |||||||||||| |  |||||||||||||||||||||| ||||| |||| | ||  | || ||||    
T  33125994 cttctcaaaccttagtcgtcactcatttcttctttttgtctattgaaaagaggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttt 33125895  T
Q  350 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |   |||| ||||| |||||||||  || ||| ||| ||||||  ||| ||||||||||||||| ||||    
T  33125894 tccttcttttataattgaataagtgatttccacataattttagtattcttttctttgtttttgtgatttcgttgtct 33125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 7995699 - 7995573
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  7995699 gggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 7995601  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    | | ||| |||||||||| |||||||||    
T  7995600 tccttttttttttgtgatatcgtcgtct 7995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 28399414 - 28399336
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||||| ||||  |||||||||| |||||| ||  |||||| ||||||||||||||| ||||||||||||||||||    
T  28399414 tttttccttatatcataattaaataagtgattttcacatatttttagttttctttcgtttgtttttgtgatttcgtcgt 28399336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 28678269 - 28678145
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || |||||| |||||||  |||| ||||| ||||||| |  |||||||  ||||||    
T  28678269 gggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttc-acatattttatattttct 28678171  T
Q  399 ttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||| ||||||||||||||||||    
T  28678170 ttcgtttgtttttgtgatttcgtcgt 28678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 42490876 - 42491001
Alignment:
Q  302 ggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||| ||||| |  ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgattt-cacatatcttcagttttctt 42490974  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  42490975 tcgtttgtttttgtgatttcgtcgtct 42491001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 44517167 - 44517255
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  | |||||||||||| ||||||||||||||||||||    
T  44517167 tccgaattgtttttccttctatcctaattcaataagtgatttc-acatattttctgctttctttcgtttgtttttgtgatttcgtcgtct 44517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 4882463 - 4882372
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || |||||| || ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  4882463 ccctccgatttgtttttcattatatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 4882372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 10627017 - 10627108
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||| |||||| || ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  10627017 ccctccgagttgtttttctttatatcctaattgaataagtaatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 10627108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 427
Target Start/End: Complemental strand, 45193761 - 45193638
Alignment:
Q  305 gatttagggtcaattttgaaccaa-agtcaccctccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    ||||||||||||||||| | |||| | |  ||||||||||| ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||    
T  45193761 gatttagggtcaattttaacccaataatacccctccgagttgttttttccttctatcctaattgaataagtgatttc-acatattttccgtttcctttcg 45193663  T
Q  403 tttatttttgtgatttcgtcgtctt 427  Q
    ||| |||||||||||| ||||||||    
T  45193662 tttgtttttgtgattttgtcgtctt 45193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 20411555 - 20411681
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||| || ||| |||||| ||||| ||||||| |  ||||||  |||||||    
T  20411555 gggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttc-acatattttctgttttct 20411653  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||| |||||| ||||||    
T  20411654 ttcgtttgtttttgggatttcatcgtct 20411681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 45425547 - 45425484
Alignment:
Q  364 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||| |||| |||| ||||||| | ||||||||||||  |||||||||||||||||||||    
T  45425547 ttaaataagtgatatccacgtattttcaattttctttcgttagtttttgtgatttcgtcgtctt 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 18343596 - 18343717
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| |||||||||| |||||  |||||| | ||| || |||||||||||| |  |||||||| | ||||||| |  ||||||  |||||||    
T  18343596 gggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgatttc-acatattttctgttttct 18343694  T
Q  399 ttcgtttatttttgtgatttcgt 421  Q
    ||||||| |||||||||||||||    
T  18343695 ttcgtttgtttttgtgatttcgt 18343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 42276339 - 42276463
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||| | ||||||  |||| |||||| ||||| || ||||| ||||||||  |||||||||| ||||||| |  |||||| |||||||||    
T  42276339 gggtgatttagggttatttttgacacaaaatcacccctccgaattgttttttcttctatcataattaaataactgatttc-acatattttcagttttctt 42276437  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||   ||||||||| ||||||||    
T  42276438 tcgttt-gatttgtgattacgtcgtct 42276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 45750507 - 45750587
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||||| ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  45750507 tttttccttttatcctaattgaataagttatttc-acatatttttggttttctttcgtttgtttttgtgatttcgtcgtctt 45750587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 29726688 - 29726609
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| ||||| |||  ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  29726688 tttttccttatatcctaatcgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 29726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 37822437 - 37822358
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||||| ||| ||||||||||||||||||||    
T  37822437 tttttccttctatcctaattgaataagtgatttc-acatattttctattttctttcatttgtttttgtgatttcgtcgtct 37822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 50107967 - 50107927
Alignment:
Q  386 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  50107967 ttttcagttttctttcgtttgtttttgtgatttcgtcgtct 50107927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 17347584 - 17347705
Alignment:
Q  304 tgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    |||||||||||||||||||| | ||| |||||| |||||||| ||||| ||||||||  ||   ||||| |||||| ||  | ||||  ||||||||||     
T  17347584 tgatttagggtcaattttgaccaaaaatcacccatccgagttgttttttcttctatcataaaggaataagtgattt-cacatcttttctgttttctttc- 17347681  T
Q  403 tttatttttgtgatttcgtcgtct 426  Q
    ||| ||||||||||||||||||||    
T  17347682 tttgtttttgtgatttcgtcgtct 17347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 15391299 - 15391265
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| ||||||||||||||||||||    
T  15391299 gttttctttcgtttgtttttgtgatttcgtcgtct 15391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 51418037 - 51418121
Alignment:
Q  340 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||||||||||||| |||| || || ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  51418037 gagttgtttttccttctatcctaattgaa-aagtgatttc-acatattttctgttttctttcgtttgtttttgtaatttcgtcgtct 51418121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 34899025 - 34899082
Alignment:
Q  362 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttc 419  Q
    |||||||||| |||||||| | |||||| ||||||||||||| |  ||||||||||||    
T  34899025 aattaaataagtgatttccgtatattttcagttttctttcgtatgattttgtgatttc 34899082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 426
Target Start/End: Complemental strand, 21955020 - 21954831
Alignment:
Q  238 tctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc- 336  Q
    |||| ||||||| ||||||||||| ||  |||||| | ||||||||| ||||| |   |||||||||||||||||||||||||| | ||||| |||| |     
T  21955020 tctctcttctctccttctcaaaccctagtcgtcggtcctttcttcttcttgtccaccaaagaagggtgatttagggtcaattttaacccaaaatcactca 21954921  T
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||  |||| | ||||||||||||| | ||||||||||||||||||||    
T  21954920 tccgagttgtttttcattctatcctaattaaataaatgatttccacatattgtcagttttctttcgtctgtttttgtgatttcgtcgtct 21954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 39707248 - 39707398
Alignment:
Q  276 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc-ctccgagttatttttccttctatccaaattaaataattg 374  Q
    |||||||||||||||||   || ||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| |||||||| |||||||||| |     
T  39707248 tttcttcttattgtctacc-aataagggtgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagtt 39707346  T
Q  375 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  39707347 atttccatgtattttcacttttcattcgtttgtttttgtgatttcgtcgtct 39707398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 28665051 - 28664925
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  28665051 gggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 28664953  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| |||||||    
T  28664952 ttcgtttgtttttgtgattttgtcgtct 28664925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 9785299 - 9785425
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttct 9785397  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||||||||||||||||||||||||    
T  9785398 tttgtttatttttgtgatttcgtcgtct 9785425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 426
Target Start/End: Original strand, 45482048 - 45482172
Alignment:
Q  303 gtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    ||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||| |  || |||    
T  45482048 gtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttatgcgttgttt 45482146  T
Q  401 cgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||| ||||||||||||||    
T  45482147 cgtttgtttttatgatttcgtcgtct 45482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 10574299 - 10574490
Alignment:
Q  237 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 335  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  10574299 ctctctcttctctccttctcaaaccctatccgtcacccctttcttctttttcttctttttagatgggtgatttagggtcaattttgactcaaaaatcacc 10574398  T
Q  336 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    | ||||| || ||||||||| ||||| |||| |||||  |||||  |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10574399 cctccgaattgtttttccttttatcctaattgaataaacgatttt-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10574490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 36579448 - 36579325
Alignment:
Q  304 tgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||||||||||||||| || ||| |||||| ||||| || ||||||||||||||| | || ||||| ||||| |||  ||||||  |||||||||     
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgatt-ccacatattttttgttttctttt 36579350  T
Q  402 gtttatttttgtgatttcgtcgtct 426  Q
    |||| ||||||||||||||||||||    
T  36579349 gtttgtttttgtgatttcgtcgtct 36579325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 22747646 - 22747521
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||| |||| |||| |||||||||| |||| ||||| ||||||  |  ||||||| |||||||    
T  22747646 gggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgatttg-acatattttatgttttct 22747549  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| |||||||||||||||||| |||||    
T  22747548 ttcatttatttttgtgatttcgccgtct 22747521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 45457695 - 45457569
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||||||||||||  ||||  |||| ||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttatgttttct 45457597  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||| |||||||| ||||||    
T  45457596 ttcgtttgttttcgtgatttcatcgtct 45457569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 426
Target Start/End: Original strand, 32740733 - 32740861
Alignment:
Q  300 agggtgatttagggtcaattttgaaccaaag--tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 396  Q
    |||||||||||| ||||||||||| | |||   |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||    
T  32740733 agggtgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgatttc-acatattttttgtttt 32740831  T
Q  397 ctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||||||||||||||||||    
T  32740832 ctttcgttgatttttgtgatttcgtcgtct 32740861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 5684347 - 5684473
Alignment:
Q  301 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5684347 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5684445  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||  |||||||||||||| ||||    
T  5684446 ttcgtttgcttttgtgatttcgttgtct 5684473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 5709397 - 5709523
Alignment:
Q  301 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5709397 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5709495  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||  |||||||||||||| ||||    
T  5709496 ttcgtttgcttttgtgatttcgttgtct 5709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 17509339 - 17509217
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17509339 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17509241  T
Q  403 tttatttttgtgatttcgtcgtct 426  Q
    ||| |||||||||||| |||||||    
T  17509240 tttgtttttgtgattttgtcgtct 17509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 17543875 - 17543997
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17543875 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17543973  T
Q  403 tttatttttgtgatttcgtcgtct 426  Q
    ||| |||||||||||| |||||||    
T  17543974 tttgtttttgtgattttgtcgtct 17543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 46026168 - 46026042
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| |||| | ||||| || ||||||||||||||| |||| ||||| | ||||  |  ||||||  |||||||    
T  46026168 gggtgatttagggtcaattttgacccaaaaatcacacatccgaattgtttttccttctatcctaattgaataagttattt-aacatattttttgttttct 46026070  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||| ||||||||||||    
T  46026069 ttcgtttgtttttgttatttcgtcgtct 46026042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 10094461 - 10094550
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10094461 tccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10094550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 11833003 - 11833127
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccc--tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    ||||||| |||||||||||| |||||  ||||||  ||||| || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  || ||||||    
T  11833003 tgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttc-acatattttctgtattcttt 11833101  T
Q  401 cgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||||||||||||||||||    
T  11833102 cgtttgtttttgtgatttcgtcgtct 11833127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 14657924 - 14657834
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| | ||||||||||||||  |||| ||||| | ||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  14657924 tccgagctgtttttccttctatcttaattgaataagttatttcacatatattttcagttttcttttgtttgtttttgtgatttcgtcgtct 14657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 21603445 - 21603570
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    ||||||||||||||||||||||| | |||  ||||| || || || ||||||||||||||| |||| ||||| ||||||| |  |||| |  ||||||||    
T  21603445 gggtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattctctgttttctt 21603543  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    || ||| |||||||||||| |||||||    
T  21603544 tcctttgtttttgtgattttgtcgtct 21603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 42603907 - 42603782
Alignment:
Q  302 ggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    ||||||||| ||||||||||||  | ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||||||  ||||||||    
T  42603907 ggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgattt-cacatattttctgttttctt 42603809  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  42603808 tcgtttgtttttgtgatttcgtcgtct 42603782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 29352205 - 29352345
Alignment:
Q  277 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattga 375  Q
    |||||||| ||||| || ||||| |||||||||| | | ||||||||   | | ||| |||||||||||||||||  || ||||| |||||||||| |||    
T  29352205 ttcttcttcttgtcaatcgaagatgggtgatttatgattaattttgacttagaatcatccctccgagttattttta-ttatatcctaattaaataagtga 29352303  T
Q  376 tttccatgtattttaagttttctttcgtttatttttgtgatt 417  Q
    ||||||  |||| | ||||||||||||||| |||| ||||||    
T  29352304 tttccacatattctcagttttctttcgtttgttttcgtgatt 29352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 427
Target Start/End: Complemental strand, 39533115 - 39532987
Alignment:
Q  300 agggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    |||||||||||||||||||||||| |||||  ||| | ||| || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||    
T  39533115 agggtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttc 39533017  T
Q  398 tttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||| |||| |||| ||||||||||||||||    
T  39533016 ttttgtttgttttcgtgatttcgtcgtctt 39532987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 27535438 - 27535566
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 397  Q
    ||||||||||||||||||||| | || ||| |||||| ||||| || ||||||||||||| | ||||  |||| ||||||| ||| ||||||  |||||     
T  27535438 gggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttcacatatattttctgtttta 27535537  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| ||| |||||||||||| |||||||    
T  27535538 tttcatttgtttttgtgattttgtcgtct 27535566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 41287939 - 41288066
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaa-agtcaccc-tccgagtta-tttttccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||| | ||||||||||||||| |||| ||||  |||||| ||  ||||||  |||| |    
T  41287939 gggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgattt-cacatattttctgtttcc 41288037  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||| ||||||| |||||||    
T  41288038 tttcgtttgttttagtgattttgtcgtct 41288066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 1281276 - 1281150
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||| ||||||| | |||  |||||| ||||| || |||||| || ||| | |||| ||||| ||||||| |  ||||||  |||||||    
T  1281276 gggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttc-acatattttttgttttct 1281178  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  1281177 ttcgtttgtttttgtgatttcgtcgtct 1281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 17473862 - 17473736
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17473862 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17473764  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| |||||||||||| |||||||    
T  17473763 ttcatttgtttttgtgattttgtcgtct 17473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 17579352 - 17579478
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17579352 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17579450  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| |||||||||||| |||||||    
T  17579451 ttcatttgtttttgtgattttgtcgtct 17579478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 48304534 - 48304405
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| ||  ||||||| |||||| |||| ||||| |||||| |||  |||||  |||||||    
T  48304534 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgattt-catagattttctgttttct 48304436  T
Q  399 ttcgtt--tatttttgtgatttcgtcgtctt 427  Q
    || |||  | |||||||||||||||||||||    
T  48304435 ttagtttgtttttttgtgatttcgtcgtctt 48304405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 3266364 - 3266496
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagttattttt------ccttctatccaaattaaataattgatttccatgtattttaag 392  Q
    |||||||||| |||||||||||| |||| | ||| ||||||||||| |||||      |||||||||| |||| ||||| ||||||| |  ||||||  |    
T  3266364 gggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtgatttc-acatattttctg 3266462  T
Q  393 ttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| |||||||||||||||||||||| |||||||    
T  3266463 tttcctttcgtttatttttgtgattttgtcgtct 3266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 15674704 - 15674629
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  15674704 tttttcctcctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtc 15674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 21990691 - 21990768
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    |||||||| |||||| |||| ||||| ||||||| ||| |||| |  |||||||||||||| ||||||||||||||||||    
T  21990691 tttttcctgctatcctaattgaataagtgatttcacatatattct--gttttctttcgtttgtttttgtgatttcgtcgt 21990768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 24320322 - 24320236
Alignment:
Q  339 cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||| ||||||||||||| ||||||    
T  24320322 cgagttgtttttccttctatcttaatttaataagtgatttc-acatattttttgttttcttttgtttgtttttgtgatttcatcgtct 24320236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 2622612 - 2622701
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||| || ||||||||||||||  |||| ||||| | ||||| |  ||||||  |||||||| ||||| |||||||||||||||||||||    
T  2622612 tccgaattgtttttccttctatcttaattgaataagtaatttc-agatattttctgttttcttgcgtttgtttttgtgatttcgtcgtctt 2622701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 36719599 - 36719565
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| ||||||||||||||||||||    
T  36719599 gttttctttcgtttgtttttgtgatttcgtcgtct 36719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 420
Target Start/End: Original strand, 42644705 - 42644778
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcg 420  Q
    ||||||||||||||| |||| ||||| ||||||| |  |||| |  |||||||||||||| ||||||||||||||    
T  42644705 tttttccttctatcctaattgaataagtgatttc-acatattctctgttttctttcgtttgtttttgtgatttcg 42644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 4028168 - 4028281
Alignment:
Q  303 gtgatttagggtcaattttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattga-tttccatgtattttaagttttctttc 401  Q
    |||||||||||| |||||||| ||||| |||||  |||| ||||||||| |||| |   | |||||||| ||| ||| ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacc--ccgacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttctttc 4028265  T
Q  402 gtttatttttgtgattt 418  Q
      || ||||||||||||    
T  4028266 -attgtttttgtgattt 4028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 43847087 - 43847178
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || ||||||||  ||||| |||| ||||| ||||||| |  ||||||  |||||| ||||||| |||| |||||||||||||||    
T  43847087 ccctccgaattgtttttcctcttatcctaattgaataagtgatttc-acatattttctgttttccttcgtttgttttggtgatttcgtcgtct 43847178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 426
Target Start/End: Complemental strand, 12717280 - 12717130
Alignment:
Q  276 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 374  Q
    ||||||||| ||||||||||||  ||| |||||||| ||||||||||| ||||| ||| || ||||| || ||||| ||||||||| |||||||||| ||    
T  12717280 tttcttcttcttgtctattgaaagagg-tgatttagagtcaattttgacccaaaatcatccgtccgacttgttttttcttctatcctaattaaataagtg 12717182  T
Q  375 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||  |||||| ||||||||||||||| ||||||||||||| ||||||    
T  12717181 atttccacatattttcagttttctttcgtttgtttttgtgatttcttcgtct 12717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 426
Target Start/End: Complemental strand, 22049611 - 22049417
Alignment:
Q  232 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 331  Q
    |||||||||| ||||| | ||||||||||| || | || | || ||||||||| |||||||  ||| |||||||||||||||| |||||||| ||||| |    
T  22049611 tttttctctctcttctttccttctcaaaccgtagc-gtagcccctttcttcttcttgtctaccgaacaagggtgatttagggttaattttgacccaaaat 22049513  T
Q  332 caccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||  ||| || ||||||||||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||||||||| || |||||| ||||    
T  22049512 caccctttcgaattgtttttccttctatcctaattgaataagtgatttccacatattttcagttttctttcatttatttttatggtttcgttgtct 22049417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 237 - 426
Target Start/End: Original strand, 22757015 - 22757202
Alignment:
Q  237 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 335  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  22757015 ctctctcttctctccttctcaaaccctagccgtcacccttttcttcttcttct---tttcagaggggtgatttagggtcaattttgactcaaaaatcacc 22757111  T
Q  336 -ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
     |||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| ||||| |||||||| ||||||||||||||||||||    
T  22757112 actccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttttttcgtttgtttttgtgatttcgtcgtct 22757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 6881973 - 6882064
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||||| ||||||||||||||||||||    
T  6881973 cccttcgagttatttttccttctatcctaattaaataagtgattt-cacatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 6882064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 7060306 - 7060433
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||| |||||||||||||||| | |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  7060306 gggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 7060404  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||||||||||||||||||||    
T  7060405 ttcgtttgtttttgtgatttcgtcgtctt 7060433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 20400046 - 20399916
Alignment:
Q  297 agaagggtgatttagggtcaattttgaaccaaag-tcaccctcc-gagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 394  Q
    ||||||| ||||||||||||||||||| |||||  |||||| || || ||  |||| ||||||||| |||| ||||| ||||||| || ||||||  |||    
T  20400046 agaagggcgatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttc-atatattttctgtt 20399948  T
Q  395 ttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||||||||||||||||||||    
T  20399947 ttctttcgtttatttttgtgatttcgtcgtct 20399916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 27394812 - 27394938
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  ||||||| |||  |||||||||||||||||| |||| ||||| | ||||  |  ||||||| |||||||    
T  27394812 gggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaatttaaaa-tattttatgttttct 27394910  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  27394911 ttcgtttgtttttgtgatttcgtcgtct 27394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 29268916 - 29268790
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| || ||| |||||| |||||||| ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  29268916 gggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 29268818  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  29268817 ttcgtttgtttttgtgatttcgtcgtct 29268790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 44757181 - 44757055
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| | |||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44757181 gggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 44757083  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||| ||||||||||||||    
T  44757082 ttcgtttgtttttatgatttcgtcgtct 44757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 13965545 - 13965668
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  |||| || ||||||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc-acatattctatgttttctttc 13965643  T
Q  402 gtttatttttgtgatttcgtcgtct 426  Q
    |||| ||||||||||||||||||||    
T  13965644 gtttgtttttgtgatttcgtcgtct 13965668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 24825631 - 24825758
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| |||||||||| | |||  |||| |||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  24825631 gggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctattttct 24825729  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||||||||||||||||||||    
T  24825730 ttcgtttgtttttgtgatttcgtcgtctt 24825758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 50801235 - 50801325
Alignment:
Q  335 cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||||    
T  50801235 cctccgaattatttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgtct 50801325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 5814330 - 5814455
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||||||||| |||||  ||| |||||| |||| |||| |||||||||  |||| ||||| | ||||| |  |||||| |||||||||    
T  5814330 ggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttatttc-acatatttttagttttctt 5814428  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  5814429 tcgtttgtttttgtgatttcgtcgtct 5814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 411
Target Start/End: Original strand, 3159000 - 3159136
Alignment:
Q  276 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccct-ccgagttatttttccttctatccaaattaaataattg 374  Q
    ||||||||| |||| ||| ||||| || |||||||||||||| ||| | ||||| ||||  | ||||||| ||||||||||||||  |||||||||| ||    
T  3159000 tttcttcttcttgtttatcgaagagggatgatttagggtcaacttttacccaaaatcactattccgagttgtttttccttctatcataattaaataagtg 3159099  T
Q  375 atttccatgtattttaagttttctttcgtttattttt 411  Q
    |||| ||  |||||| || |||||||||||| |||||    
T  3159100 attttcacatattttcagctttctttcgtttgttttt 3159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 6911662 - 6911788
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  ||||| |||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  6911662 gggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 6911760  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||| ||||||    
T  6911761 ttcgtttgtttttgtgatttcttcgtct 6911788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 43244520 - 43244394
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  43244520 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattttcgattttct 43244422  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| |||||||    
T  43244421 ttcgtttgtttttgtgattttgtcgtct 43244394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 478150 - 478030
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||| |||||||||||| |||||  ||||| ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||| |||    
T  478150 gggtgatttatggtcaattttgacccaaaaatcaccatccgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgtttcctt 478052  T
Q  400 tcgtttatttttgtgatttcgt 421  Q
    ||||||||||||||||||||||    
T  478051 tcgtttatttttgtgatttcgt 478030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 24568852 - 24568728
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||| |||||||| |||||  ||||||| |||| |||||||||||||||||| |||| ||||| ||||||  |  |||| |  ||||| |    
T  24568852 gggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt-tacatattatctgttttat 24568754  T
Q  399 ttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||| ||||||||||||||||||    
T  24568753 ttcgtttgtttttgtgatttcgtcgt 24568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 43493391 - 43493300
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  43493391 ccctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 43493300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 394413 - 394287
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  394413 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgattt-cacatcttttctgctttct 394315  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||| | ||||||||||||||    
T  394314 ttcgtttgtttctatgatttcgtcgtct 394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 7861344 - 7861219
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||  |||||||||| |||||  ||||| ||| || |||||||||||||||||| |||||||||| |||||| ||  ||||||  ||||| |    
T  7861344 gggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgattt-cacatattttctgtttt-t 7861247  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||||||    
T  7861246 ttcatttgtttttgtgatttcgtcgtct 7861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 30202020 - 30202146
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| | | |||| ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30202020 gggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgatttc-acatattttctgttttct 30202118  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  30202119 ttcgtttgtttttgtgatttcgtcgtct 30202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 426
Target Start/End: Original strand, 25658091 - 25658275
Alignment:
Q  243 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc-ctccg 340  Q
    ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||| ||||||||  ||||  ||||| ||||     
T  25658091 cttctctccttctcaaaccctagccgtcacccttttcttcttcttcttctttttagaggggtgatttagggttaattttgactcaaaaatcacctctcca 25658190  T
Q  341 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    | || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  |||||||||||| | ||||||||||||||||||||    
T  25658191 aattgtttttccttctttcctaatttaataagtgatttc-acatattttctgttttctttcgtatgtttttgtgatttcgtcgtct 25658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 24100121 - 24100249
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 397  Q
    |||||||||||| ||||||||||||| ||| | |||| ||||| || ||||||||||||||  |||| ||||| ||||||| ||| | || |  ||||||    
T  24100121 gggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttcacatattttctctgttttc 24100220  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| ||||||  ||||||||||||    
T  24100221 tttcgtttgtttttgcaatttcgtcgtct 24100249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 26742602 - 26742475
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  26742602 gggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttc-acatattttctgttttct 26742504  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||| ||||||| ||||||||    
T  26742503 ttcgtttgttttcgtgattttgtcgtctt 26742475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 8712512 - 8712634
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||  | || ||||||||||||||| | || | ||| ||||||| |  ||||||  |||||||    
T  8712512 gggtgatttagggtcaattttgacccaaaaatcacccctcataattgtttttccttctatcctagttgagtaagtgatttc-acatattttttgttttct 8712610  T
Q  399 ttcgtttatttttgtgatttcgtc 422  Q
    ||||||| ||||||||||||||||    
T  8712611 ttcgtttgtttttgtgatttcgtc 8712634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 7083950 - 7083829
Alignment:
Q  306 atttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgt 403  Q
    |||||||||||||||||| |||||  |||||| |  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||   |||||||||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttc-acatattttctattttctttcgt 7083852  T
Q  404 ttatttttgtgatttcgtcgtct 426  Q
    || ||||||||||||||||||||    
T  7083851 ttgtttttgtgatttcgtcgtct 7083829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 42197535 - 42197662
Alignment:
Q  301 gggtgatttagggtcaattttga-accaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaag--ttttc 397  Q
    |||||||||||||| |||||||| |  ||| ||||  ||||| |||||||||||||||||| |||| ||||| ||| || || |||||||  |  ||||     
T  42197535 gggtgatttagggttaattttgacaaaaaaatcactttccgaattatttttccttctatcctaatttaataagtgactt-cacgtattttttgttttttt 42197633  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| ||| ||||||||||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtct 42197662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 31521964 - 31522044
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc 379  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||||    
T  31521964 gggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 51152107 - 51152228
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| ||||||| |||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  | |||||    
T  51152107 gggtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgattt-cacatattttctgctttct 51152205  T
Q  399 ttcgtttatttttgtgatttcgtc 422  Q
    |||||||  |||||||||||||||    
T  51152206 ttcgttt-gttttgtgatttcgtc 51152228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 11210452 - 11210326
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||  | |||  |||||| ||||| ||||||||||| | |||  |||| ||||| ||||||| |  |||||    ||||||    
T  11210452 gggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgatttc-acatatttactcttttct 11210354  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  11210353 ttcgtttgtttttgtgatttcgtcgtct 11210326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 26674402 - 26674476
Alignment:
Q  347 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  26674402 ttttccttctatcataattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtc 26674476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 27090755 - 27090817
Alignment:
Q  348 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 410  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 27090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 36124396 - 36124362
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| ||||||||||||||||||||    
T  36124396 gttttctttcgtttgtttttgtgatttcgtcgtct 36124362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 38944195 - 38944161
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| ||||||||||||||||||||    
T  38944195 gttttctttcgtttgtttttgtgatttcgtcgtct 38944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 39837576 - 39837704
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||| ||||||||||| |||||  |||||| | ||| || ||||||| || ||||| |||| ||||| ||||||| |  ||||||  ||||||    
T  39837576 gggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgatttc-acatattttctgttttc 39837674  T
Q  398 tttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||| ||||| |||||||||| ||||    
T  39837675 tttcgtttgtttttttgatttcgtcatctt 39837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 626686 - 626566
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||  |||||||| |||||  |||||| || || ||||||||| |||||||  |||| ||||| |||||  |||  |||||  |||||||    
T  626686 gggtgatttagggctaattttgacccaaaaatcacccatctgaattatttttc-ttctatcataattgaataagtgattcacat--attttctgttttct 626590  T
Q  399 ttcgtttatttttgtgatttcgtc 422  Q
    ||||||| ||||||||||||||||    
T  626589 ttcgtttgtttttgtgatttcgtc 626566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 3880616 - 3880676
Alignment:
Q  364 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||||  ||||||||| || ||| ||||||||||||||| ||||| |||||| |||||    
T  3880616 ttaaataagcgatttccatatactttgagttttctttcgtttgtttttttgattttgtcgt 3880676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 20887801 - 20887769
Alignment:
Q  394 tttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||| ||||||||||||||||||||    
T  20887801 tttctttcgtttgtttttgtgatttcgtcgtct 20887769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 51958420 - 51958460
Alignment:
Q  386 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| |||||| ||||||||||||||||||| |||||||||    
T  51958420 ttttcagttttatttcgtttatttttgtgatctcgtcgtct 51958460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 17767715 - 17767566
Alignment:
Q  276 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 374  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||| ||| | |||||| | |||||| ||||||||| ||||| |||||||||| ||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccccttcgagttgtttttccttatatcctaattaaataagtg 17767616  T
Q  375 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    |||||||  |||||| ||||||||||| |||  |||||||||||||||||    
T  17767615 atttccacatattttcagttttctttcatttgattttgtgatttcgtcgt 17767566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 27095687 - 27095813
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  27095687 gggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttttgttttct 27095785  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  27095786 ttcgtttgtttttgtgatttcgtcgtct 27095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 44942267 - 44942394
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44942267 gggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttc-acatattttatgttttct 44942365  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    || |||| |||||||||||||||||||||    
T  44942366 tttgtttgtttttgtgatttcgtcgtctt 44942394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 20561271 - 20561145
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||||||  ||||| || |||| |  ||||||  |||||||    
T  20561271 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttc-acatattttctgttttct 20561173  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  20561172 ttcgtttgtttttgtgatttcgtcgtct 20561145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 22597117 - 22597243
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  ||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  22597117 gggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgattt-cacatattttttgttttct 22597215  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||| |||||| |||||||    
T  22597216 ttcgtttgtttttatgattttgtcgtct 22597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 43474267 - 43474141
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |   |||||  |||||||    
T  43474267 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acaaattttctgttttct 43474169  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  43474168 ttcgtttgtttttgtgatttcgtcgtct 43474141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 5754270 - 5754396
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  ||| |||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  5754270 gggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgatttc-acatattttttgttttct 5754368  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||||||    
T  5754369 ttcatttgtttttgtgatttcgtcgtct 5754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 33012059 - 33012185
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || ||||||||||||| | |||| ||||| ||||||| |  |||||| |||||| |    
T  33012059 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttc-acatattttcagttttgt 33012157  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  33012158 ttcgtttgtttttgtgatttcgtcgtct 33012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 25067835 - 25067960
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||   |||| ||||| ||||||| |  ||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttc-acatattttctgttttctt 25067933  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  25067934 tcgtttctttttgtgatttcgtcgtct 25067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 418
Target Start/End: Complemental strand, 11798653 - 11798537
Alignment:
Q  303 gtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||| |||||||||||| ||||| |||||| |||  |||  |||||||| ||||| |||||||||| | |||||||  |||||| ||||||||||     
T  11798653 gtgatttatggtcaattttgacccaaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttccacatatttttagttttctttt 11798554  T
Q  402 gtttatttttgtgattt 418  Q
    |||| ||||||||||||    
T  11798553 gtttgtttttgtgattt 11798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 12704669 - 12704795
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12704669 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 12704767  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| |||||||    
T  12704768 ttcgtttgtttttgtgattttgtcgtct 12704795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 15919856 - 15919977
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||| ||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  |||||| |  |||||    
T  15919856 gggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgattt-cacatattttca-atttct 15919953  T
Q  399 ttcgtttatttttgtgatttcgtc 422  Q
    ||||||| ||||||||||||||||    
T  15919954 ttcgtttgtttttgtgatttcgtc 15919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 6431480 - 6431402
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||||| ||| | |||||||||| |||||||||  |||||| |||||||||| |||| ||||||||||||||||||    
T  6431480 tttttccttatattctaattaaataagtgatttccacatattttcagttttcttttgtttgtttttgtgatttcgtcgt 6431402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 13740762 - 13740677
Alignment:
Q  336 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||| || ||||||  |||||||||||||| ||||||||||||||||    
T  13740762 ctccgaattgtttttccttctatcctaattgaataagtgatttc-atatattttctgttttctttcgtttgtttttgtgatttcgtc 13740677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 11937998 - 11937871
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||||| |||||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  11937998 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgattt-cacatattttttgttttc 11937900  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||| ||||| ||||||    
T  11937899 tttcgttgatttttgtaatttcttcgtct 11937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 38535444 - 38535318
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaa--gtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |   ||||  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38535444 gggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttc-acatattttctgttttct 38535346  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  38535345 ttcgtttgtttttgtgatttcgtcgtct 38535318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 11581203 - 11581141
Alignment:
Q  364 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  11581203 ttaaataagtgattttcatatatttttagttttctttggtttgtttttgtgatttcgtcgtct 11581141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 428
Target Start/End: Complemental strand, 34416865 - 34416772
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttg 428  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  |||||| |||||| ||| |||| ||||||||||||||||||||||    
T  34416865 ccctccgaattgtttttccttatatcctaattgaataagtgatttc-acatattttcagtttttttttgtttgtttttgtgatttcgtcgtcttg 34416772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 35333534 - 35333611
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||    
T  35333534 tttttcctgctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgt 35333611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 4739346 - 4739437
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||| |||||||||| |||| |||||||||| | |||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||    
T  4739346 ccctccgagttgtttttccttccatcctaattaaataagtaattt-cacatattttctgtttttttccgtttgtttttgtgatttcgtcgtct 4739437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 4604450 - 4604320
Alignment:
Q  297 agaagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 394  Q
    |||||||||||||| |||||||||||| |||||  | || | | |||||| ||||||||||||| | |||| ||||| ||||||| |  ||||||  | |    
T  4604450 agaagggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttc-acatattttctgct 4604352  T
Q  395 ttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || ||||||||||||||||||||    
T  4604351 ttctttcgattgtttttgtgatttcgtcgtct 4604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 9978808 - 9978682
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| | | | || ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9978808 gggtgatttaaggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgatttc-acatattttctgttttct 9978710  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  9978709 ttcgtttgtttttgtgatttcgtcgtct 9978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 32015202 - 32015332
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaat----taaataattgatttccatgtattttaagtt 394  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| ||||||||| ||||  |||    ||||||| |||||| ||  ||||||  |||    
T  32015202 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttatatcataattcaataaataagtgattt-cacatattttctgtt 32015300  T
Q  395 ttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||| ||||||||||||||||||||    
T  32015301 ttcattcatttgtttttgtgatttcgtcgtct 32015332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 4426759 - 4426671
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||| ||| ||||| ||||||||||||||    
T  4426759 tccgatttgtttttccttctatcctaattgaataaatgatttc-acatattttctgttttctttcatttgtttttttgatttcgtcgtct 4426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 31908952 - 31908828
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||| ||||||||||| |||||  ||||||| |||| || ||||| ||| ||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  31908952 tgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgatttc-acatattttctgttttctttc 31908854  T
Q  402 gtttatttttgtgatttcgtcgtctt 427  Q
    |||| ||||| |||||||||||||||    
T  31908853 gtttgtttttctgatttcgtcgtctt 31908828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 32314462 - 32314550
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32314462 tccgaattgttttttcttctatcctaattgaataaatgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32314550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 17268263 - 17268183
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttc 379  Q
    |||||||||| |||||||||||| |||||  ||| |||| |||||| ||||||||||||||| |||| ||||| |||||||    
T  17268263 gggtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttc 17268183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 10287053 - 10287018
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||||||||| |||||||||||||||||||||    
T  10287053 gttttctttcgtttgtttttgtgatttcgtcgtctt 10287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 41797668 - 41797703
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||||||||| |||||||||||||||||||||    
T  41797668 gttttctttcgtttgtttttgtgatttcgtcgtctt 41797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 17792540 - 17792578
Alignment:
Q  384 tattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  17792540 tattttcagttttctttcgtttgtttttgtgatttcgtc 17792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 18089531 - 18089409
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| |||| ||||||| || ||||| ||| ||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  18089531 gggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgattt-cacatattttctgttttct 18089433  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |    ||||||||||||||||||||    
T  18089432 ttag----tttttgtgatttcgtcgtct 18089409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Complemental strand, 12891165 - 12891132
Alignment:
Q  393 ttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||| ||||||||||||||||||||    
T  12891165 ttttctttcgtttgtttttgtgatttcgtcgtct 12891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 13879095 - 13879027
Alignment:
Q  349 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 418  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  13879095 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 13879027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 14019220 - 14019152
Alignment:
Q  349 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 418  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  14019220 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 14019152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 9690112 - 9689993
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||| ||||| |||||  |||||| |||||  | ||||||||||||||| |||| ||||| |||| || |  ||||||  ||||| |    
T  9690112 gggtgatttaaggtcaaatttgacccaaaaatcacccctccgaactgtttttccttctatcctaattgaataagtgatctc-acatattttttgtttttt 9690014  T
Q  399 ttcgtttatttttgtgatttc 419  Q
    ||||||| |||||||||||||    
T  9690013 ttcgtttgtttttgtgatttc 9689993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 17055210 - 17055158
Alignment:
Q  277 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaa 329  Q
    |||||||| |||||||| ||| || |||||||||| ||||||||||| |||||    
T  17055210 ttcttcttcttgtctatcgaataaaggtgatttagagtcaattttgatccaaa 17055158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 6119 - 6245
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6119 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 6217  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  6218 ttcgtttgtttttgtgatttcgtcgtct 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 426
Target Start/End: Complemental strand, 106206 - 106056
Alignment:
Q  278 tcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc--cgagttatttttccttctatccaaattaaataattga 375  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| || ||||| |||||| |  || ||| |||||| ||||| || |||||||||| |||    
T  106206 tcttctttttgtctaccgaagaggggtgatttagggtcaatttcgatccaaaatcacccccatcgggttgtttttcattctaccctaattaaataagtga 106107  T
Q  376 tttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  106106 ttttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 106056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 36691946 - 36691820
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  36691946 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgattt-cacatattttctgtttcct 36691848  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  36691847 ttcgtttgtttttgtgatttcgtcgtct 36691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 31270308 - 31270434
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| |||||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  31270308 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 31270406  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||| ||||||||||||    
T  31270407 ttcgtttgtttttgtaatttcgtcgtct 31270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 11819065 - 11819191
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||| |||||||    
T  11819065 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttatgttttct 11819163  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||||||    
T  11819164 ttcatttgtttttgtgatttcgtcgtct 11819191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 425
Target Start/End: Complemental strand, 13702119 - 13701994
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaa-gtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  13702119 gggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttc-acatattttctgttttct 13702021  T
Q  399 ttcgtttatttttgtgatttcgtcgtc 425  Q
    ||| ||| |||||||||||||||||||    
T  13702020 ttcatttgtttttgtgatttcgtcgtc 13701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 53155577 - 53155453
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  53155577 gggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttc-acatattttatgttttct 53155479  T
Q  399 ttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||| ||||||| ||||||||||    
T  53155478 ttcgtttgtttttgtaatttcgtcgt 53155453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 2147756 - 2147835
Alignment:
Q  347 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| |||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||| ||||||||||||||||||||    
T  2147756 ttttcgttctatcctaattgaataagtgatttccacatattttcagttttctttcatttgtttttgtgatttcgtcgtct 2147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 3456925 - 3457051
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  ||||| |||||| || ||||||||||||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  3456925 gggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattta-acatattttttgttttct 3457023  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||||||    
T  3457024 ttcctttgtttttgtgatttcgtcgtct 3457051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 48652587 - 48652461
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  48652587 gggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 48652489  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  48652488 ttcgtttgtttttgtgatttcgtcgtct 48652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 426
Target Start/End: Complemental strand, 32080965 - 32080775
Alignment:
Q  238 tctcgcttctcttcttctcaaaccttaaccgtcggcc-atttcttcttattgtctattga-agaagggtgatttagggtcaattttgaaccaaag-tcac 334  Q
    |||| ||||||| ||||||||||| || |||||| || |||||||||| || | | |||  ||| ||||||||||||||||||||||| |||||  ||||    
T  32080965 tctctcttctctccttctcaaaccctagccgtcgccccatttcttcttcttct-tgttgtcagatgggtgatttagggtcaattttgacccaaaaatcac 32080867  T
Q  335 cc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    || ||||| || |||||||||||| |  |||| ||||  ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32080866 ccctccgatttgtttttccttctaccttaattgaataggtgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32080775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 35174733 - 35174812
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  35174733 tttttccttctatcctaattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 35174812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 425
Target Start/End: Complemental strand, 54239127 - 54239040
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtc 425  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||    
T  54239127 tccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtc 54239040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 31462893 - 31462767
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  31462893 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgttttct 31462795  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||| ||||||||||||||||||||    
T  31462794 tttgtttgtttttgtgatttcgtcgtct 31462767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 34961005 - 34960879
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||| |||||||||||||||| |||||  |||||| || || || ||||| ||||||| | |||| ||||| ||||||| |  ||||||| |||||||    
T  34961005 gggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttc-acatattttatgttttct 34960907  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||| ||||||    
T  34960906 ttcgtttgtttttgtgatttcatcgtct 34960879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 36624841 - 36624715
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||| |||||||||  ||| |||||  |||||| ||||| || ||||||||||||||| || ||||||| ||||||| |  ||||||  |||||||    
T  36624841 gggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttccttctatcctaactaaataagtgatttc-acatattttctgttttct 36624743  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||| ||||||||||||||||||||    
T  36624742 tttgtttgtttttgtgatttcgtcgtct 36624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 48400881 - 48401007
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||| | || || || |||||||||||| || | || ||||| ||||||| |  ||||||  |||||||    
T  48400881 gggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttc-acatattttttgttttct 48400979  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  48400980 ttcgtttgtttttgtgatttcgtcgtct 48401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 24520706 - 24520746
Alignment:
Q  387 tttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  24520706 tttaagtattctttcgtttatttttgtgatttcgtcgtctt 24520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 41868394 - 41868315
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  ||||||||||||||  |||||||||||||||||||    
T  41868394 tttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgcttttgtgatttcgtcgtct 41868315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 47733960 - 47733900
Alignment:
Q  364 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    |||||| | ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  47733960 ttaaatgagtgatttccatgtaattttagttttctttcgtttgtttttgtgatttcatcgt 47733900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 49628187 - 49628108
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  49628187 tttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 49628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 14585444 - 14585570
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||| ||||||||||| |||||  |||| ||||  | || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  14585444 gggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 14585542  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||| ||||||||||||| ||||||    
T  14585543 tttgtttgtttttgtgatttcctcgtct 14585570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 22484994 - 22485074
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||||||||||| |||| ||||| ||||||| |||  |||||  |||||||||||||| |||||||||||||||| ||||    
T  22484994 tttttccttctatcctaattgaataagtgatttcgcat--attttctgttttctttcgtttgtttttgtgatttcgtcatctt 22485074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 38527245 - 38527371
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| ||||| ||||||||||  |||| | ||| | || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38527245 gggtgatttaggatcaatcttgaaccaaaaatcacacatccaaattgtttttccttctatcttaattgaataaatgatttc-acatattttctgttttct 38527343  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||| ||||||||||||||    
T  38527344 ttcgtttgtttttatgatttcgtcgtct 38527371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 40013421 - 40013293
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagtttt 396  Q
    |||||||||| ||||||||||| |||||  |||||| | ||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  |||||    
T  40013421 ggtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgtttt 40013323  T
Q  397 ctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| ||||||||||||||||||||    
T  40013322 ctttcgtttgtttttgtgatttcgtcgtct 40013293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 4219226 - 4219288
Alignment:
Q  364 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||| ||  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  4219226 ttaaataagtgattttcacatattttcagttttctttcgtttgtttttatgatttcgtcgtct 4219288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 33637477 - 33637511
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||||||||||||||||||||||||    
T  33637477 gttttctttcgtttatttttgtgatttcgtcgtct 33637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 40883968 - 40883891
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||||| ||||| |||| ||||| |||||||  | ||||||  |||||||||||||| ||||||||||||||||||    
T  40883968 tttttccttttatcctaattgaataagtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtcgt 40883891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 40401586 - 40401521
Alignment:
Q  362 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||||| ||||||||| ||||||| |||  | |||||||||||||| ||||||||| |||||    
T  40401586 aattaaataagtgatttccacgtattttcagtcatatttcgtttatttttatgatttcgtagtctt 40401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 55090695 - 55090604
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || |||||||||||| |  |||||||||| ||||||| |  ||||||  |||||||||| ||| ||||||||||| ||||||||    
T  55090695 ccctccgatttgtttttccttctaccttaattaaataagtgatttc-acatattttctgttttctttcatttgtttttgtgattccgtcgtct 55090604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 39610244 - 39610321
Alignment:
Q  349 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||| |||||||||||| ||||||||    
T  39610244 ttccttctatcctaattgaataagtgatttc-acatattttttgtttcctttcgtttgtttttgtgattttgtcgtctt 39610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 43839643 - 43839601
Alignment:
Q  296 aagaagggtgatttagggtcaattttgaaccaaagtcaccctc 338  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  43839643 aagatgggtgatttagggtcaatttttgaccaaagtcaccctc 43839601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 4206658 - 4206532
Alignment:
Q  301 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 397  Q
    |||||||||| |||||||||||| |  ||| ||| |||||||| || ||||||| | ||||| |||| ||||| || |||| ||| | |||||  |||||    
T  4206658 gggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttcacatatttttta--ttttc 4206561  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| |||| ||||||||||||||||||||    
T  4206560 ttttgtttgtttttgtgatttcgtcgtct 4206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 5327538 - 5327497
Alignment:
Q  385 attttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  5327538 attttcagttttctttcgtttgtttttgtgatttcgttgtct 5327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Complemental strand, 34103772 - 34103739
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtc 425  Q
    |||||||||||||| |||||||||||||||||||    
T  34103772 gttttctttcgtttgtttttgtgatttcgtcgtc 34103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 30156428 - 30156306
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| ||  |||||||| ||||| |||| ||||| |||||| ||  ||||||| | |||||    
T  30156428 gggtgatttagggtcaattttgacccaaaaatcacccctccgaatt-gttttccttttatcctaattgaataagtgattt-cacatattttatgatttct 30156331  T
Q  399 ttcg-tttatttttgtgatttcgtc 422  Q
    |||| ||| ||||| ||||||||||    
T  30156330 ttcgttttgtttttatgatttcgtc 30156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 2968486 - 2968640
Alignment:
Q  276 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc----ctccgagttatttttccttctatccaaattaaataa 371  Q
    |||||| || |||||||||||||| | |||||||| ||||||||||||  |||| |||||    ||||||||| |||||| || ||| | ||||||||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataa 2968585  T
Q  372 ttgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
     |||||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  2968586 gtgattttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 2968640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 14600844 - 14600718
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||||||||| |||||  ||| || |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||  ||||||||    
T  14600844 ggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttc-acatattttctgttttctt 14600746  T
Q  400 tcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||| |||||||||||||||||||||    
T  14600745 tcgtttgtttttgtgatttcgtcgtctt 14600718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 31308167 - 31308256
Alignment:
Q  336 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||    
T  31308167 ctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttctttcgtttgtttttgtgatttcgtcgtct 31308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 32779063 - 32778973
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    |||| |||||| ||||||||| ||||  ||||||||||  ||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  32779063 cccttcgagttgtttttccttatatcataattaaataagagatttccacatattttcagttttctttcgtttatttttgtgatttcgtcgt 32778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 13576378 - 13576257
Alignment:
Q  245 tctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagt 343  Q
    ||||| |||||||||| |||  |||||||| ||||||||| |||||||  ||||| |||||||||||| |||||||||| | ||| ||| ||||||||||    
T  13576378 tctctccttctcaaactttagtcgtcggccctttcttcttcttgtctaacgaagaggggtgatttaggatcaattttgacctaaaatcatccctccgagt 13576279  T
Q  344 tatttttccttctatccaaatt 365  Q
    | |||||| |||||||| ||||    
T  13576278 tgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 37612635 - 37612761
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 397  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| | || ||||| ||||||| ||| | |||||  |||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttcacatatttttta--ttttc 37612732  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| ||||||||||||||||||||    
T  37612733 tttcgtttgtttttgtgatttcgtcgtct 37612761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 30027027 - 30026901
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||||| |||||| |||||  |||||| |||||||| ||||| ||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30027027 gggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttc-acatattttctgttttct 30026929  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  30026928 ttcgtttgtttttgtgatttcgtcgtct 30026901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 427
Target Start/End: Complemental strand, 10338970 - 10338842
Alignment:
Q  300 agggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||| ||||||||||||  | ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  10338970 agggtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttttgttttc 10338872  T
Q  398 tttcgtttatttttgtgatttcgtcgtctt 427  Q
    |||||||| |||||||||||||||||||||    
T  10338871 tttcgtttgtttttgtgatttcgtcgtctt 10338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 25939848 - 25939757
Alignment:
Q  246 ctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc 338  Q
    ||||||||||||||| ||| ||||| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||    
T  25939848 ctcttcttctcaaactttagccgtcagtcatttattctttttgtctatcgaagatgg-tgatttagggtcaattttgacccaaaatcaccctc 25939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 9501572 - 9501698
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||||||||||||| |||||  |||||| || || || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  9501572 ggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 9501670  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  9501671 ttcgtttgtttttgtgatttcgtcgtct 9501698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 427
Target Start/End: Original strand, 7281600 - 7281757
Alignment:
Q  273 ccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataa 371  Q
    |||||||||||| |||||||||||||| |  |||||||||||||||| | | | ||| |||||| ||||| || |||||| |||| | | | || |||||    
T  7281600 ccatttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttcttttctagttgaataa 7281699  T
Q  372 ttgatttccatgtatttta--agttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
     |||||||||| ||||||   | | ||||||||||| ||||||||||||| |||||||    
T  7281700 gtgatttccatatatttttttattgttctttcgtttgtttttgtgatttcatcgtctt 7281757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 2234619 - 2234491
Alignment:
Q  299 aagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 396  Q
    ||||||||| |||||| |||||||| |||||  |||||| | ||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||    
T  2234619 aagggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgtttt 2234521  T
Q  397 ctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| ||||||||||||||||||||    
T  2234520 ctttcgtttgtttttgtgatttcgtcgtct 2234491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 426
Target Start/End: Complemental strand, 30039536 - 30039358
Alignment:
Q  243 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccga 341  Q
    ||||||| ||| |||||||  |||||||   | |||||| || ||||||| |||||| | |||||||| |||||||||||| ||||| |||| | |||||    
T  30039536 cttctctccttttcaaaccccaaccgtcattcctttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccaaaatcactcatccga 30039437  T
Q  342 gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
     || ||||||||||| | | |||| ||||  |||||||||  |||      ||||||||||||| ||||||||||||||||||||    
T  30039436 attgtttttccttcttttctaattgaatatgtgatttccacatat------ttttctttcgtttgtttttgtgatttcgtcgtct 30039358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 39067789 - 39067709
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  39067789 tttttccttctatcctaatttaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 39067709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 24791315 - 24791189
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  ||| || ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  24791315 gggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattta-acatattttctgttttct 24791217  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  24791216 ttcgtttgtttttgtgatttcgtcgtct 24791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 31407895 - 31407769
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  ||| | |||||| || ||||||||||||||  | || ||||| ||||||| |  ||||||  |||||||    
T  31407895 gggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgatttc-acatattttttgttttct 31407797  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||| ||||||||||||||    
T  31407796 ttcgtttgtttttatgatttcgtcgtct 31407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 41361714 - 41361840
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  41361714 gggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttc-acatattttctgttttct 41361812  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| |||||||    
T  41361813 ttcgtttgtttttgtgatttggtcgtct 41361840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 2025356 - 2025230
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 397  Q
    |||||||||| |||||||||||| | |||  ||||||| || |||| ||||||||| ||| | |||| ||||| ||||||| ||||| || |  |||||     
T  2025356 gggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttcacatgttttct--gtttta 2025259  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||||||||||||||||||    
T  2025258 tttcgtttatttttgtgatttcgtcgtct 2025230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 3204899 - 3204777
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    |||||||| ||||||||||| |||||  | ||||||||| || ||||||| ||||| | |||| ||| | ||||||| |  ||||||  |||||||||||    
T  3204899 tgatttagagtcaattttgacccaaaaattaccctccgaattgtttttccatctattctaatttaatgagtgatttc-acatattttctgttttctttcg 3204801  T
Q  403 tttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||    
T  3204800 tttgtttatgtgatttcgtcgtct 3204777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 11161864 - 11161990
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||| |||||||||||||||||| |||||  |||||| | | |||| |||||| || ||||| |||| ||||| | ||||| |  | |||| ||||||||    
T  11161864 gggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcatttc-acatcttttcagttttct 11161962  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  11161963 ttcgtttgtttttgtgatttcgtcgtct 11161990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 24699808 - 24699940
Alignment:
Q  297 agaagggtgatttagggtcaattttgaacc-aaagtcaccc-tccgag--ttatttttccttctatccaaattaaataattgatttccatgtattttaag 392  Q
    ||||||||||||||||||||||||||| || ||| |||||| ||||||   | ||||| ||| ||||| |||||||||| |||||| ||  ||||||  |    
T  24699808 agaagggtgatttagggtcaattttgacccaaaaatcacccatccgagatgttttttttcttatatcctaattaaataagtgattt-cacatattttctg 24699906  T
Q  393 ttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| |||  |||||| ||||||||||||    
T  24699907 ttttctttcatttgcttttgtaatttcgtcgtct 24699940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 1810366 - 1810243
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||| ||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  1810366 gggtgatttagggtcaattttgacccaaaaatcacccctccga-tttttttttcttctatcctaattcaataagtgattt-cacattttttctgatttct 1810269  T
Q  399 ttcgtttatttttgtgatttcgtcgt 424  Q
    ||||||| ||||||||||||| ||||    
T  1810268 ttcgtttgtttttgtgatttcctcgt 1810243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 37128595 - 37128507
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  37128595 tccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtaatttcgtcgtct 37128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 10147928 - 10148055
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagtt-atttttccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||||  ||||| ||||||||| |||| ||||| |||||| ||  ||||||  |||| |    
T  10147928 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgattt-cacatattttctgtttcc 10148026  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||| ||||  |||||||    
T  10148027 tttcgtttgtttttgagattatgtcgtct 10148055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 12329608 - 12329735
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||| ||||||||||| |||||  ||||| |  ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12329608 gggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 12329706  T
Q  399 ttcgttta-tttttgtgatttcgtcgtct 426  Q
    |||||||  ||||||||||||||||||||    
T  12329707 ttcgttttgtttttgtgatttcgtcgtct 12329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 15288898 - 15288823
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15288898 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15288823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 15469267 - 15469192
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 422  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15469267 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 4757188 - 4757273
Alignment:
Q  340 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||||||||||||  |||||||||| |||||| ||  ||||||  |||||||||| ||| |||||  |||||||||||||    
T  4757188 gagttgtttttccttctatcataattaaataaatgattt-cacatattttctgttttctttcatttctttttaagatttcgtcgtct 4757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 7579910 - 7579876
Alignment:
Q  392 gttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| ||||||||||||||||||||    
T  7579910 gttttctttcgtttgtttttgtgatttcgtcgtct 7579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 10334159 - 10334284
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgta-ttttaagttttcttt 400  Q
    |||||||||||||||||||| |||||  |||| | |  ||||| ||||||||||||||| |||||||||| ||| || ||| || |||| | ||||||||    
T  10334159 tgatttagggtcaattttgatccaaaaatcactcatatgagttgtttttccttctatcctaattaaataagtgagtt-catatatttttcaattttcttt 10334257  T
Q  401 cgtttatttttgtgatttcgtcgtctt 427  Q
     |||| |||| ||||||||||| ||||    
T  10334258 tgtttgttttagtgatttcgtcatctt 10334284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 13576250 - 13576208
Alignment:
Q  384 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| |||||||||||||||||||| ||||||| |||||||    
T  13576250 tattttcagttttctttcgtttattttggtgattttgtcgtct 13576208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 23971203 - 23971117
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| ||||||||||||| | |||| ||||| |||||| ||  ||||||| |||||||||||||  | |||||||||| |||||||    
T  23971203 tccgagttgtttttccttctattctaattgaataagtgattt-cacatattttatgttttctttcgtt--tgtttgtgattttgtcgtct 23971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 35065 - 35185
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttct 398  Q
    |||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||  |||||||    
T  35065 ggtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgttttct 35164  T
Q  399 ttcgtttatttttgtgatttc 419  Q
    ||||||| |||||| ||||||    
T  35165 ttcgtttgtttttgcgatttc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 6419997 - 6419871
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6419997 gggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttc-acatattttttgttttct 6419899  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||| ||| ||||||||||||||||||||    
T  6419898 ttcatttgtttttgtgatttcgtcgtct 6419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 14783307 - 14783184
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||||||||||||||| |||||  |||| ||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  14783307 tgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttc 14783209  T
Q  402 gtttatttttgtgatttcgtcgtct 426  Q
     ||| ||||||||||||||||||||    
T  14783208 atttctttttgtgatttcgtcgtct 14783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 12481509 - 12481383
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  12481509 gggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 12481411  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  12481410 ttcgtttgtttttgtgatttcgtcgtct 12481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 15590218 - 15590092
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  15590218 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttc-acatattttctgttttct 15590120  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||  |||||||||||||||||||    
T  15590119 ttcgtttgcttttgtgatttcgtcgtct 15590092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 21507947 - 21507821
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||| | || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttct 21507849  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||| |||||||    
T  21507848 ttcgtttgtttttgtgattttgtcgtct 21507821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 23654233 - 23654358
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  || | ||||| ||||||| |  ||||||  ||||| ||    
T  23654233 ggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttc-acatattttttgttttatt 23654331  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  23654332 tcgtttgtttttgtgatttcgtcgtct 23654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 4922021 - 4921894
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||||||||||||||| |||||   |||| ||| |||  | ||||||||||||||  |||| ||||| ||||||| |  |||||| ||||||     
T  4922021 gggtgatttagggtcaattttgacccaaaaatacccctcccagtagtttttttccttctatcttaattgaataagtgatttc-acatattttcagtttta 4921923  T
Q  398 tttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||||||||| |||||||    
T  4921922 tttcgtttgtttttgtgattttgtcgtct 4921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 2304949 - 2304823
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| || ||||||| |||||  ||| ||||| ||||| |||| |||||| ||  |||| ||||| ||||||| |  ||||||  |||||||    
T  2304949 gggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgatttc-acatattttctgttttct 2304851  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  2304850 ttcgtttgtttttgtgatttcgtcgtct 2304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 31937561 - 31937433
Alignment:
Q  297 agaagggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 394  Q
    |||||||||||||||||||| |||||| || ||| ||| |||||||| || ||||| ||||||||| |||| ||||| |||||| ||  ||||||  | |    
T  31937561 agaagggtgatttagggtcagttttgacccaaaaatcacccctccgaattgttttt-cttctatcctaattgaataagtgattt-cacatattttctgat 31937464  T
Q  395 ttctttcgtttatttttgtgatttcgtcgtct 426  Q
    || |||||||| ||||||||||||||||||||    
T  31937463 tt-tttcgtttgtttttgtgatttcgtcgtct 31937433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 8693799 - 8693670
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagttt 395  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  ||||    
T  8693799 gggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgttt 8693701  T
Q  396 tctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||| ||||||| |||| |||||||    
T  8693700 tctttcgtttgtttttgtcattttgtcgtct 8693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 19402947 - 19402821
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||| |||||| |||||| |||||  |||||| |  ||||| ||||||||| ||||  |||| || || ||||||| |  ||||||  |||||||    
T  19402947 gggtgatttcgggtcacttttgatccaaaaatcacccctttgagttgtttttccttgtatcataattgaacaagtgatttc-acatattttctgttttct 19402849  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  19402848 ttcgtttgtttttgtgatttcgtcgtct 19402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 2488169 - 2488231
Alignment:
Q  348 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 410  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 2488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 6296294 - 6296262
Alignment:
Q  394 tttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||| ||||||||||||||||||||    
T  6296294 tttctttcgtttgtttttgtgatttcgtcgtct 6296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 6303104 - 6303072
Alignment:
Q  394 tttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||| ||||||||||||||||||||    
T  6303104 tttctttcgtttgtttttgtgatttcgtcgtct 6303072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 17331310 - 17331436
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  17331310 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttct 17331408  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  17331409 ttcgtttgtttttgtgatttcgtcgtct 17331436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 426
Target Start/End: Original strand, 17699537 - 17699661
Alignment:
Q  303 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    ||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  | ||||  |||||||||    
T  17699537 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatcttttctgttttcttt 17699635  T
Q  401 cgtttatttttgtgatttcgtcgtct 426  Q
    ||||| ||||||||||||||||||||    
T  17699636 cgtttgtttttgtgatttcgtcgtct 17699661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 424
Target Start/End: Original strand, 25961878 - 25962033
Alignment:
Q  271 ggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagtt-atttttccttctatccaaattaaa 368  Q
    |||| ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||| | ||| || | ||||||  ||||||||| ||||| |||||||    
T  25961878 ggccctttcttcttcttgtctatcaaaga-gggtgatttagggtcaattttgatccagaatcatccattcgagttggtttttccttatatcctaattaaa 25961976  T
Q  369 taattgatttccatgta-ttttaagttttctttcgtttatttttgtgatttcgtcgt 424  Q
    ||| ||||||| |  || |||| ||||||||||| ||| ||||||||||||||||||    
T  25961977 taagtgatttctacatatttttcagttttctttcctttgtttttgtgatttcgtcgt 25962033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 29097771 - 29097898
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| |||||| |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  29097771 gggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 29097869  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    || |||| |||||||||||||||||||||    
T  29097870 ttagtttgtttttgtgatttcgtcgtctt 29097898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 178244 - 178119
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    ||||||||| ||||||||||||  ||||  ||||| ||||||||| | ||||||| ||||| |||| ||||| ||||||| |  ||||||| ||||||||    
T  178244 ggtgatttaaggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgatttc-acatattttatgttttctt 178146  T
Q  400 tcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||||||||||    
T  178145 tcgtttgtttttgtgatttcgtcgtct 178119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 39179932 - 39179841
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| |||||||||||||||| | |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  39179932 ccctccgaattatttttccttctattctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 39179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 424
Target Start/End: Complemental strand, 12439771 - 12439649
Alignment:
Q  302 ggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    ||||||||||||  |||||||| | |||  ||||||||||| || |||||| |||||||| | || ||||| ||||||| || ||||||  |||||||||    
T  12439771 ggtgatttagggataattttgacctaaaaatcaccctccgaattgtttttcattctatcctagttgaataagtgatttc-atatattttttgttttcttt 12439673  T
Q  401 cgtttatttttgtgatttcgtcgt 424  Q
    ||||| ||||||||||||||||||    
T  12439672 cgtttgtttttgtgatttcgtcgt 12439649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 43493854 - 43493972
Alignment:
Q  301 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||| | |||| ||||| |||||| ||  ||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgattt-cacatattttttgttttct 43493952  T
Q  399 ttcgtttatttttgtgattt 418  Q
    ||||||| ||||||||||||    
T  43493953 ttcgtttgtttttgtgattt 43493972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 6281026 - 6281152
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| || || |||||||||||||||| | |||| ||||| ||||||  |  ||||||   ||||||    
T  6281026 gggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgatttt-acatattttctattttct 6281124  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  6281125 ttcgtttgtttttgtgatttcgtcgtct 6281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 28040611 - 28040737
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| |||||||||||| |||||  |||||| ||| | |  ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  28040611 gggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 28040709  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  28040710 ttcgtttgtttttgtgatttcgtcgtct 28040737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 33164607 - 33164481
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| ||||||||||||  ||||  |||| ||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  33164607 gggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 33164509  T
Q  399 ttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| ||||||||||||||||||||    
T  33164508 ttcgtttgtttttgtgatttcgtcgtct 33164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 6635234 - 6635358
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccctcc--gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    |||||||||| ||||||||| |||||  ||||||||   ||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||    
T  6635234 tgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgatttc-acatattttctgttttcttt 6635332  T
Q  401 cgtttatttttgtgatttcgtcgtct 426  Q
     |||| ||||||||||||||||||||    
T  6635333 agtttgtttttgtgatttcgtcgtct 6635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 426
Target Start/End: Complemental strand, 17096432 - 17096252
Alignment:
Q  244 ttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaa-agtca-ccctccga 341  Q
    |||||||||||||||||| ||   |||  |||||||||||| |||||      ||| ||||||||||||||||||||||| |||| | ||| |||||| |    
T  17096432 ttctcttcttctcaaaccctagttgtcacccatttcttcttcttgtc------agaggggtgatttagggtcaattttgacccaataatcacccctccca 17096339  T
Q  342 ---gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
       ||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||||||||| |||||||||||| |||||||    
T  17096338 gttgttttttttccttctatcctaattgaataagtgattt-cacatattttctgtttcctttcgtttgtttttgtgattttgtcgtct 17096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 32347854 - 32347729
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttc 397  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||     
T  32347854 gggtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttc-acatattttctgtttta 32347756  T
Q  398 tttcgtttatttttgtgatttcgtcgt 424  Q
    |||||||| ||||||||||||||||||    
T  32347755 tttcgtttgtttttgtgatttcgtcgt 32347729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 27241046 - 27241173
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 398  Q
    |||||||||| | |||||||||| |||||  |||||| || || || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  27241046 gggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 27241144  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||| ||||||| |||||||||||||    
T  27241145 ttcgtttgtttttgtaatttcgtcgtctt 27241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 3740387 - 3740465
Alignment:
Q  347 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||| ||||||||||||||||    
T  3740387 ttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttgtgtgatttcgtcgtct 3740465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 17687225 - 17687313
Alignment:
Q  337 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| ||||||||||||||  |||| ||||| | ||||| |  |||||| |||||||||| |||| ||||||||||||||| ||||    
T  17687225 tccgagttgtttttccttctatcttaattgaataagttatttc-acatattttcagttttcttttgtttgtttttgtgatttcgttgtct 17687313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 34431045 - 34431169
Alignment:
Q  304 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 401  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||| |||||||   |||| ||||| ||||||| |  ||||||  ||||||||||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttc-acatattttctgttttctttc 34431143  T
Q  402 gtttatttttgtgatttcgtcgtctt 427  Q
    ||||  ||||||||||||||||||||    
T  34431144 gtttgattttgtgatttcgtcgtctt 34431169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 39531540 - 39531422
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||  |||||||||||||  |||| ||||| |||||| ||  || |||  ||||||||    
T  39531540 gggtgatttaaggtcaattttgacccaaaatcatccctccgagtt-gttttccttctatcgtaattgaataagtgattt-cacata-tttctgttttctt 39531444  T
Q  400 tcgtttatttttgtgatttcgt 421  Q
    | |||| |||||||||||||||    
T  39531443 ttgtttgtttttgtgatttcgt 39531422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 20483168 - 20483295
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaatta-aataattgatttccatgtattttaagttttct 398  Q
    |||||||||||| |||||||||| |||||  ||||||||| | || ||||||||| ||| | ||||  ||||| ||||||| |  ||||||  ||||| |    
T  20483168 gggtgatttaggatcaattttgacccaaaaatcaccctccaaattgtttttccttttattctaatttgaataagtgatttc-acatattttctgttttgt 20483266  T
Q  399 ttcgtttatttttgtgatttcgtcgtctt 427  Q
    || |||| |||||||||||||||||||||    
T  20483267 tttgtttgtttttgtgatttcgtcgtctt 20483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 23882208 - 23882129
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||| ||||||||||||| ||||| ||||||  |  |||||||  |||||| |||||| ||||||||||||||||||||    
T  23882208 tttttctttctatccaaattgaataagtgatttg-acatattttatattttctatcgtttgtttttgtgatttcgtcgtct 23882129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 12891706 - 12891784
Alignment:
Q  347 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||| ||||    
T  12891706 ttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgttgtct 12891784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 11824970 - 11824917
Alignment:
Q  304 tgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttct 356  Q
    ||||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  11824970 tgatttaaggtcaattttgatccaaaatcatccctccgaattatttttccttct 11824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 18653806 - 18653890
Alignment:
Q  341 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| ||||| ||| ||||| |||| ||||| |||||||  | ||||||  | |||||||||||| ||||||||||||||||||||    
T  18653806 agttgttttttcttatatcctaattgaataagtgatttcg-tatattttctgatttctttcgtttgtttttgtgatttcgtcgtct 18653890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 981168 - 981104
Alignment:
Q  297 agaagggtgatttagggtcaattttgaaccaa-agtc-accctccgagttatttttccttctatc 359  Q
    |||||||||||||||| |||||||||| |||| | ||  ||||||||||| ||||||||||||||    
T  981168 agaagggtgatttaggatcaattttgacccaataatcgcccctccgagttgtttttccttctatc 981104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 426
Target Start/End: Complemental strand, 1292 - 1099
Alignment:
Q  234 tttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tc 332  Q
    |||||||| ||||| | | ||||||||| || |||||| || ||||||||| || | | |   ||| |||||||||| |||||||||||| |||||  ||    
T  1292 tttctctctcttctatccatctcaaaccctagccgtcgcccctttcttctttttctttttgtcagaggggtgatttaaggtcaattttgacccaaaaatc 1193  T
Q  333 accc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||| | ||| || |||||||||||| || |||| ||||| ||||||| |  |||||| ||||||||||||||| ||||||||||||||||||||    
T  1192 acccctgcgaattgtttttccttctaccctaattgaataagtgatttc-acatattttcagttttctttcgtttgtttttgtgatttcgtcgtct 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 4 - 83
Alignment:
Q  346 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  4 tttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 427
Target Start/End: Complemental strand, 4209 - 4079
Alignment:
Q  297 agaagggtgatttagggtcaattttga-accaaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 394  Q
    |||||| |||||||||||||||||||| || ||| |||| |||  ||||| | || |||||||||| |||||||||| ||||||| |  ||||||| |||    
T  4209 agaaggctgatttagggtcaattttgacacaaaaatcactcctttgagttgtctt-ccttctatcctaattaaataagtgatttc-acatattttatgtt 4112  T
Q  395 ttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||||||| |||||||||||||||||||||    
T  4111 ttctttcgtttgtttttgtgatttcgtcgtctt 4079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 2882 - 3010
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 396  Q
    ||||||||||||||||||||||| |||| | ||| ||||||||||  | ||||||||||||||| |||| ||||| |||||| ||  ||||||  ||||     
T  2882 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgattt-cacatattttctgtttc 2980  T
Q  397 ctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||||| |||||||||||| |||||||    
T  2981 ctttcgtttgtttttgtgattttgtcgtct 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 7228 - 7137
Alignment:
Q  334 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  7228 ccctccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 7137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 427
Target Start/End: Original strand, 74148 - 74273
Alignment:
Q  303 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 400  Q
    |||||||||  |||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||    
T  74148 gtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttcttt 74246  T
Q  401 cgtttatttttgtgatttcgtcgtctt 427  Q
    ||||| ||||||||||||  |||||||    
T  74247 cgtttgtttttgtgattttttcgtctt 74273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 2555 - 2438
Alignment:
Q  301 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 399  Q
    |||||||||||||||| |||||| |||||  |||||||| ||||| ||||||||||||||  |||  ||||| |||||| ||  ||||||  ||||||||    
T  2555 gggtgatttagggtcatttttgacccaaaaatcaccctctgagttgtttttccttctatcataatcgaataagtgattt-cacatattttctgttttctt 2457  T
Q  400 tcgtttatttttgtgatttc 419  Q
    ||||||  ||||||||||||    
T  2456 tcgttt-gttttgtgatttc 2438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 1640 - 1682
Alignment:
Q  384 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 426  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  1640 tattttatgttttctttcgtttgtttttgtgatttcgtcgtct 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 426
Target Start/End: Complemental strand, 404393 - 404271
Alignment:
Q  305 gatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 402  Q
    |||||| |||||||||||| |||||  |||||| ||||| |  |||||| | |||||| |||| ||||| ||||||| |  ||||||  |||||||| ||    
T  404393 gatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttc-acatattttctgttttcttccg 404295  T
Q  403 tttatttttgtgatttcgtcgtct 426  Q
    ||| ||||||||||||||||||||    
T  404294 tttgtttttgtgatttcgtcgtct 404271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 202126 - 202062
Alignment:
Q  363 attaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 427  Q
    ||||||||| |||||||||  |||||| ||| |||||||||||  | ||||||||||||| ||||    
T  202126 attaaataagtgatttccacatattttcagtattctttcgttttgtattgtgatttcgtcatctt 202062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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