View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_11 (Length: 454)
Name: NF6914_low_11
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 27442395 - 27441973
Alignment:
| Q |
13 |
catcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27442395 |
catcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacactgc |
27442296 |
T |
|
| Q |
113 |
tgtgaaaaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatg |
212 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442295 |
tgtgaaaaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatg |
27442196 |
T |
|
| Q |
213 |
acatgcatggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcagga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442195 |
acatgcatggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcagga |
27442096 |
T |
|
| Q |
313 |
atattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctg |
412 |
Q |
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| T |
27442095 |
aaattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctg |
27441996 |
T |
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| Q |
413 |
aatattattttgatgctcataag |
435 |
Q |
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| T |
27441995 |
aatattattttgatgctcataag |
27441973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
23 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
122 |
Q |
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||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
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| Q |
123 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
222 |
Q |
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|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
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| Q |
223 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
287 |
Q |
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|| |||||| ||||||||| ||| ||| | ||| ||||||| |||| | |||||||||||||| |
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| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
29 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
128 |
Q |
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||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
|
| Q |
129 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
228 |
Q |
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|| ||| || ||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || || |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
229 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
287 |
Q |
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|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
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| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
23 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
122 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
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| Q |
123 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
222 |
Q |
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||||| || ||| || |||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
223 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
287 |
Q |
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|| |||||| ||| ||||| ||| ||| | | ||||||||| ||| |||||||||| ||||| |
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| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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