View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_14 (Length: 428)
Name: NF6914_low_14
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 44782890 - 44782476
Alignment:
| Q |
11 |
atggacatcatggaggagcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagt |
110 |
Q |
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| T |
44782890 |
atggacataatggaggagcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagt |
44782791 |
T |
|
| Q |
111 |
ttacctggttgacctacaatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatgg |
210 |
Q |
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| T |
44782790 |
ttacctggttgacctacaatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatgg |
44782691 |
T |
|
| Q |
211 |
atagcataacatatttttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcat |
310 |
Q |
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| T |
44782690 |
atagcataacatatttttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcat |
44782591 |
T |
|
| Q |
311 |
acttgtaaatcctaaacaactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttgg |
410 |
Q |
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| T |
44782590 |
acttgtaaatcctaaacaactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttgg |
44782491 |
T |
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| Q |
411 |
ttttcttctctctcg |
425 |
Q |
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| T |
44782490 |
ttttcttctctctcg |
44782476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 64 - 378
Target Start/End: Complemental strand, 48422874 - 48422547
Alignment:
| Q |
64 |
atacaaggaactcagaaaatacaaaattcatttgacttaa----cagtagtttacctggttgacctacaatagttcaccacaacaggataattcatgatt |
159 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || ||||||||| || || || | || ||||| |
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| T |
48422874 |
atacaaggaactcagaaaatacagatttcatttgacttaatcatcagtagtttacctggttgaccaacgatagttcactactgcaagacagtttgtgatt |
48422775 |
T |
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| Q |
160 |
gtgttgtctgtatagcacatcgagattgagtt-cccttgttctgataaatggatagcataacatatttttgtaatatctggtcttgcgtgggtatacata |
258 |
Q |
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| T |
48422774 |
aggttgtctatacagcacattgagattgagttggccttcttctgatggatggatagcataacaagtttttgtaatatatggtcttgtgggggtatgtaaa |
48422675 |
T |
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| Q |
259 |
cttcggtaatgaagattgatttgcttgccgctgcattatgtttgct--------gagcatacttgtaaatcctaaacaactatgggggccattattccgc |
350 |
Q |
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| T |
48422674 |
cttcaaaaatgaagaatgatatgcttattgctgcatcatgtttgctactttgcggaacatacttgtcaatcctgaacaactttgggggccgttattacac |
48422575 |
T |
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| Q |
351 |
tagaaatttgtttttgctttggagggat |
378 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
48422574 |
tagaaacatgtttttgctttggagggat |
48422547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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