View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_15 (Length: 424)
Name: NF6914_low_15
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_15 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 110659 - 111055
Alignment:
| Q |
11 |
gatggacatcattgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagt |
110 |
Q |
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| T |
110659 |
gatggaaatctttgtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagt |
110758 |
T |
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| Q |
111 |
gtatgctgaaatcggtttgtgtgattctatgatttctttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggc |
210 |
Q |
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| T |
110759 |
gtatgctgaaatcggttggtgtgattctatgattt--ttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggc |
110856 |
T |
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| Q |
211 |
taattttgaatgggtcaaaatgaatcataatttttcgttctttttaagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110857 |
taattttgaatgggtcaaaatgaatcataatttttcgttctttttaagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagta |
110956 |
T |
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| Q |
311 |
cattatattaaatttaagaagccatgggatgaactgtttagagtattagaaattgaactatatgtttagtactctttttattattaagaacgtgatgtc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
110957 |
cattatattaaatttaagaagccatgggatgaactgtttagagtattagaaattgaactatatgcttagtactctttttattattaagaacgtgatgtc |
111055 |
T |
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