View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_16 (Length: 419)
Name: NF6914_low_16
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 31589781 - 31589372
Alignment:
| Q |
1 |
ttaaatcaggggtgaagcctgtgaatgataattaattgtgctgactttggcttttgaccagcctttattgttgaatcctaacattggcttctgatggatc |
100 |
Q |
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| T |
31589781 |
ttaaatcaggggtgaagcctgtgaatgataattaattgtgctgactttggcttttgaccagcctttattgttgaatcctaacattggcttctgatggatc |
31589682 |
T |
|
| Q |
101 |
tcaattgttgaaagacgggttcatgttcctaattagcgaaaattacaaaagaatgctggtcggattgaaacagggcaaacaaggttgacaaagaaaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31589681 |
tcaattgttgaaagacgggttcatgttcctaattagcgaaaattacaaaagaatgctggtcggattgaaacagggcaaacaaggttgacaaagaaaagac |
31589582 |
T |
|
| Q |
201 |
gagaccacaccacatgcagagagctaactaagctttatgcgtgaagaataccgtgt----aatttgtaggtgaagcatcaatcagtgaagaaagctgggt |
296 |
Q |
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| T |
31589581 |
gagaccacaccacatgcagagagctaactaagctttatgcgtgaagaataccatgtgttcaatttgtaggtgaagcatcaatcagtgaagaaagctgggt |
31589482 |
T |
|
| Q |
297 |
gctaagtggaaaaggagaaaacaaatgttgcctgcggttttgtatttttggtgactggcggacaatattttgattttgccaagagagatcttctgttctt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31589481 |
gctaagtggaaaaggagaaaacaaatgttgcctgcggttttgtatttttggtgactggcggacaatattttgattttgccaagagagatcttctgttctt |
31589382 |
T |
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| Q |
397 |
tctttgatgt |
406 |
Q |
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|||||||||| |
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| T |
31589381 |
tctttgatgt |
31589372 |
T |
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