View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_21 (Length: 370)
Name: NF6914_low_21
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_21 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0169 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 7234353 - 7234707
Alignment:
| Q |
16 |
ggacatcatttaatgataagggtgggtaaggtggggaaatgtatgtttgtccataaccgcgaattggaatttcctgtccactgccaacgacgatattttt |
115 |
Q |
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| T |
7234353 |
ggacattatttaatgataagggtgggtaaggtggggaaatgtatgtttgtccataaccgcgaattggaatttcctgtccactgccaacaacgatattttt |
7234452 |
T |
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| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattttcatcaggaacattc |
215 |
Q |
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| T |
7234453 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattttcatcaggaacattc |
7234552 |
T |
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| Q |
216 |
aaggacagattatgcattgccgcatcgatgtctgtaggtgcataatttgaaggagttggcccatgaacactataagcctgtggtggacgagttcctgtag |
315 |
Q |
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| T |
7234553 |
aagaacagattatgcattgccgcatcgatgtctgtaggtgcataatttgaaggagttggcccatgagcactataagcctgtggtggacgagttcctgtag |
7234652 |
T |
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| Q |
316 |
ccatgggggaacgatttgatggtggacgaacccaattggatgtggggtaaggaca |
370 |
Q |
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| T |
7234653 |
ccacgggggaacgatttgatggtggacgaacccaattggatgtggggtaaggaca |
7234707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 17613869 - 17613632
Alignment:
| Q |
16 |
ggacatcatttaatgataagggtgggtaaggtggggaaatgtatgtttgtccataaccgcgaattggaatttcctgtccactgccaacgacgatattttt |
115 |
Q |
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| T |
17613869 |
ggacattatttaatgataagggtgggtatggtggggaaaggtatgtttgtccataaccacgaacaagaatttcaaatccactgccatcaacaacattttt |
17613770 |
T |
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| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattttcatcaggaacattc |
215 |
Q |
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| T |
17613769 |
attaaagctcaaactagaata----------------taagatccagtcaagtgtgaagttgcaccaatgtccatgtaccaagtttcatcaggaacattc |
17613686 |
T |
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| Q |
216 |
aaggacagattatgcattgccgcatcgatgtctgtaggtgcataatttgaagga |
269 |
Q |
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| T |
17613685 |
aaggacaaattttgaatcacaacatcgatgtcagtaggtgcataatttgaagga |
17613632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 1850905 - 1850821
Alignment:
| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattt |
200 |
Q |
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| T |
1850905 |
attattgctcaaattaaaataagacgagagattaccttgctcggaagtcatgtgggatgtggcaccagtgtccatgtaccaattt |
1850821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 36647342 - 36647258
Alignment:
| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattt |
200 |
Q |
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| T |
36647342 |
attattgctcaaattaaaataagacgagagattaccttgctcggaagtcatgtgggatgtggcaccagtgtccatgtaccaattt |
36647258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 19654018 - 19654092
Alignment:
| Q |
296 |
tggtggacgagttcctgtagccatgggggaacgatttgatggtggacgaacccaattggatgtggggtaaggaca |
370 |
Q |
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| T |
19654018 |
tggtggacgaattcctgtagccaaaggggaacgatttgatggtggaagaactcaattggatgtggggtaacgaca |
19654092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 14234 - 14150
Alignment:
| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattt |
200 |
Q |
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| T |
14234 |
attattgctcaaattaaaataagacgagagattaccttgctcggaagtcatgtgggatgtggcaccagtgtccatgtaccaattt |
14150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 19737 - 19653
Alignment:
| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattt |
200 |
Q |
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| T |
19737 |
attattgctcaaattaaaataagacgagagattaccttgctcggaagtcatgtgggatgtggcaccagtgtccatgtaccaattt |
19653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 7082005 - 7081921
Alignment:
| Q |
116 |
attaatgctcaaattagaataagtagagagagtaccttgagatgcagtcatgtgtgatgttgcaccagtgtccatgtaccaattt |
200 |
Q |
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|||| ||||||||||| |||||| |||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||||| |
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| T |
7082005 |
attattgctcaaattaaaataagacgagagattaccttgctcggaagtcatgtgggatgtggcaccagtgtccatgtaccaattt |
7081921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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