View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_22 (Length: 369)
Name: NF6914_low_22
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 6343456 - 6343114
Alignment:
| Q |
1 |
gaagcgaatatggggtacatattgctatttacaccaacttaaaaaatgaataaaccgatctgaactgccgctgaaaaataccgagcaacagttaacttcc |
100 |
Q |
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| T |
6343456 |
gaagcgaatatggggtacatatttctatttacatcaacttaaaaaatgaataaaccgatctgaactgccgctgaaaaatatcgagcaacagttaacttcc |
6343357 |
T |
|
| Q |
101 |
gatgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataataggcaaggtcgaactaaattttgcaagacctaagtataatct |
200 |
Q |
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| T |
6343356 |
aatgaattaagcgaatgaacaattatgaaatagatttgagcaatttttgaaata-----ggca-ggtcgaactaaattttgcaagacttaaggataatct |
6343263 |
T |
|
| Q |
201 |
gtcagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgatacaacctacttttt |
300 |
Q |
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| T |
6343262 |
gttaaaaaatttaaggcctgtatctagcatgcggtctatcataaatttattttttaggtttaaatatgacattttgaaagtctgatacgacctacctttt |
6343163 |
T |
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| Q |
301 |
aacagctaattcatatgagcgatgaaggaaatagtgacaattgaaaatg |
349 |
Q |
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| T |
6343162 |
aacagctaattcatatgagcgatgaaggaaatagtcacaattgaaaatg |
6343114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 302
Target Start/End: Complemental strand, 6342586 - 6342387
Alignment:
| Q |
103 |
tgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataataggcaaggtcgaactaaattttgcaagacctaagtataatctgt |
202 |
Q |
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| T |
6342586 |
tgaattaatgggatgaataattaggacatggattagagcaatcttcaaaatataataggttaggccgaactaaattttgcaaaatctaagtctaatctac |
6342487 |
T |
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| Q |
203 |
cagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgatacaacctactttttaa |
302 |
Q |
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| T |
6342486 |
caaaatttttaagatcaatgtctagcatgtggcgtgtcgtaggtttattatttaggtttgaatgtgacattttaaaaatctgatatgacctactatttaa |
6342387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 9711030 - 9710930
Alignment:
| Q |
187 |
cctaagtataatctgtcagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgat |
286 |
Q |
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| T |
9711030 |
cctaagtctaatttgtcaaaaaatttaagacctaaatttaacatgcggtttatcatagacttatattttaaaactgaatttgatatttttaaagtctgat |
9710931 |
T |
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| Q |
287 |
a |
287 |
Q |
| |
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| |
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| T |
9710930 |
a |
9710930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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