View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_25 (Length: 339)
Name: NF6914_low_25
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10806304 - 10805977
Alignment:
| Q |
1 |
tccatagtgtggatcaatgagggtggaatgacacagatttgaacacatcccttcaagaccacgacaggacatctaaagtgtggacaaatgcggatggaat |
100 |
Q |
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| T |
10806304 |
tccatagcgtggatcaatgagggtggaatgacacagatttgaacacatcccttcaagaccacgacagaacatctaaagtgtggacaaatgcggatggaat |
10806205 |
T |
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| Q |
101 |
aacagagaacttgaccgaataataaatctaggatagactatgataccattttagattttggatctaagggataacttaacttcatcccacaaaatcgact |
200 |
Q |
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| T |
10806204 |
aacagagaacttgaccgaataataaatctaggatagactaagataccattttagattttggatctgagggataacttaacttcat----caaaatcgact |
10806109 |
T |
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| Q |
201 |
tgtaagacaaggactgctcaatagttttagatcacaatcgcggatgcattgtgatccttgatatagtgaaaaaattccagtaaaatataaccgatagaac |
300 |
Q |
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| T |
10806108 |
tgtaagacaaggactgctcaatagttttagatcacaatcgcggatgcattgtgatccttgatatagtgaaaaaattccagtaaaatataaccgatagaac |
10806009 |
T |
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| Q |
301 |
cacaaatggagatatcaaaacactgatgtcca |
332 |
Q |
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| T |
10806008 |
cacaaatggagatatcataacactgatgtcca |
10805977 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 46976217 - 46976280
Alignment:
| Q |
97 |
gaataacagagaacttgaccgaataataaatctaggatagactatgataccattttagattttg |
160 |
Q |
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| T |
46976217 |
gaataatagagatcttgacctaataacaaatttaggatagactctgataccattttagagtttg |
46976280 |
T |
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