View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_27 (Length: 335)
Name: NF6914_low_27
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 43288894 - 43288638
Alignment:
| Q |
18 |
catatgaattggacaagagacagcggtgtcattagggaatcaaacgtaccgtccttcaacaattctctttatatatacacttttttcattgcccttttaa |
117 |
Q |
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| T |
43288894 |
catatgaattggacaagagacagcggtgtcattagggaatcaaacgtaccgtccttcaacaattctctttatatatacacttttttcattgcccttttaa |
43288795 |
T |
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| Q |
118 |
ttaataataacaagttagtatatatcttcatcaatatatactattccttttcttcactatacacattccttgcctttgatcatttggctatatctattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288794 |
ttaataataacaagttagtatatatcttcatcaatatatactattccttttcttcactatacacattccttgcctttgatcatttggctatatctattct |
43288695 |
T |
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| Q |
218 |
atacctagatttccatatgtgtgaccaatatattataattaagagaagaaataatct |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288694 |
atacctagatttccatatgtgtgaccaatatattataattaagagaagaaataatct |
43288638 |
T |
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