View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_28 (Length: 327)
Name: NF6914_low_28
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_28 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 19292739 - 19292454
Alignment:
| Q |
1 |
attgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcacaaatgtaagatttagtg |
96 |
Q |
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| T |
19292739 |
attgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcacaaatgtaagattttgcg |
19292640 |
T |
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| Q |
97 |
atgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaatatatagcc |
196 |
Q |
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| T |
19292639 |
atgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttaga----atagcc |
19292544 |
T |
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| Q |
197 |
taaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaagc |
288 |
Q |
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| T |
19292543 |
taaagttgctac--atatttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaagc |
19292454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 37704531 - 37704485
Alignment:
| Q |
281 |
tgaaaagcacccccaaaacaaaagaagggaatacgtagactcaattt |
327 |
Q |
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| T |
37704531 |
tgaaaagcacccccaaaacaaaataagggaatacgtagactcaattt |
37704485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 37699052 - 37699008
Alignment:
| Q |
281 |
tgaaaagcacccccaaaacaaaagaagggaatacgtagactcaat |
325 |
Q |
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|||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
37699052 |
tgaaaagcacccccaacacaaaataagggaatacctagactcaat |
37699008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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