View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_32 (Length: 304)
Name: NF6914_low_32
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_32 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 184080 - 183814
Alignment:
| Q |
15 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184080 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
183981 |
T |
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| Q |
115 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183980 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
183881 |
T |
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| Q |
215 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183880 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
183814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 493436 - 493702
Alignment:
| Q |
15 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493436 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
493535 |
T |
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| Q |
115 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493536 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
493635 |
T |
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| Q |
215 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
281 |
Q |
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| T |
493636 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
493702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 18191097 - 18191363
Alignment:
| Q |
15 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191097 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
18191196 |
T |
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| Q |
115 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191197 |
gccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtag |
18191296 |
T |
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| Q |
215 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
281 |
Q |
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| T |
18191297 |
gagtgcagagacagccaggaggtttgcctagaagcagccacccttgaaagagtgcgtaatagctcac |
18191363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 34656704 - 34656843
Alignment:
| Q |
15 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34656704 |
tggacatctaggggtaaagcactgtttcagcgcgggccgcgagagccgtaccaaatcgaggcaaactctgaatactagatatccctggcaggtcaagtcg |
34656803 |
T |
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| Q |
115 |
gccagtgagacgatgggggataagcttcatcgtcgagagg |
154 |
Q |
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| T |
34656804 |
gccagtgagacgatgtgggataagcttcatcgtcgagagg |
34656843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 34658576 - 34658701
Alignment:
| Q |
156 |
aaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtaggagtgcagagacagccaggaggtttgcctagaagcagccac |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658576 |
aaacagcccagatcaccagctaaggcccctaaatgatcgttcagtgataaaggaggtaggagtgcagagacagccaggaggtttgcctagaagcagccac |
34658675 |
T |
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| Q |
256 |
ccttgaaagagtgcgtaatagctcac |
281 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
34658676 |
ccttgaaagagtgcataatagctcac |
34658701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 16006356 - 16006459
Alignment:
| Q |
15 |
tggacatctaggggtaaagcactgtttcggcgcgggccgcgagagcggtaccaaatcgaggcaaactctgaatactagatatccctggcgggtcaagtcg |
114 |
Q |
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||||||| ||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16006356 |
tggacatttaggggtaaagcattgtttcggcacgggccgcgggagcggttccaaatcgaggcaaactctgaatattagatatccctggcgggtcaagtcg |
16006455 |
T |
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| Q |
115 |
gcca |
118 |
Q |
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|||| |
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| T |
16006456 |
gcca |
16006459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 21628 - 21497
Alignment:
| Q |
108 |
caagtcggccagtgagacgatgggggataagcttcatcgtcgagagggaaacagcccagatcaccagctaaggcccctaaatgatcgctcagtgata--- |
204 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||||| ||||||| |
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| T |
21628 |
caagtcggccagtgagacgatgggggataagattcatcgtcgagagggaaattgtccagatcaccaactaa----cttaaatgatcgcttagtgataaag |
21533 |
T |
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| Q |
205 |
-aaggaggtaggagtgcagagacagccaggaggttt |
239 |
Q |
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||| ||||||||||||||||||| ||| ||||||| |
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| T |
21532 |
taagtaggtaggagtgcagagacatccaagaggttt |
21497 |
T |
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