View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_34 (Length: 296)
Name: NF6914_low_34
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_34 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 22844396 - 22844660
Alignment:
| Q |
14 |
atggacatcagaagaggaagcggcactcaaagctggagtagtcaagcatgggatgggcgaaaagttagatgatgaactgaaagctcagccccatccaaat |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22844396 |
atggtcatcagaagaggaagcggcactcaaagctggagtaatcaagcatgggatgggcgaaaagttagatgatgaactgaaagctcagccccatccaaat |
22844495 |
T |
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| Q |
114 |
ttgttttcaaacccaaatcattcctggtttggttattaatcaaagaaattacactcgaagaaacatcttctctcgtgaaccagcaaacgaagaacggaga |
213 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22844496 |
ttgtttttaaagccaaatcattcctggtttggttattaatcaaagaaattacactcgaagaaacatcttctctcgtgaaccagcaaacgaagaacggaga |
22844595 |
T |
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| Q |
214 |
aaagaggatccccaacgaaagcatcaaaacggcggtttcactgctgttcaaacgaatggagaaga |
278 |
Q |
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| T |
22844596 |
aaagaggatccccaatgaaagcatcaaaacggcggtttcactgctgttcaaacgaatggagaaga |
22844660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 22833194 - 22833312
Alignment:
| Q |
142 |
ttggttattaatcaaagaaattacactcgaagaaacatcttctctcgtgaaccagcaaacgaagaacggagaaaagaggatccccaacgaaagcatcaaa |
241 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| | || |||||| | ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
22833194 |
ttggttattaatcaaagaaatcacactcgaagaaatatcgccgcttgtgaacaaccaaacgaagaaaggagaaaagaggatccccaatgaaagcatcaaa |
22833293 |
T |
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| Q |
242 |
acggcggtttcactgctgttc |
262 |
Q |
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||| |||||||||| ||||| |
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| T |
22833294 |
acg--ggtttcactgttgttc |
22833312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 22824771 - 22824903
Alignment:
| Q |
142 |
ttggttattaatcaaagaaattacactcgaagaaacatcttctctcgtgaaccagcaaacgaagaacggagaaaagaggatccccaacgaaagcatcaaa |
241 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| || ||||| || ||| ||||||||||||||||| ||||||||||||| |||||||| |
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| T |
22824771 |
ttggttattaatcaaagaaattacacttgaacaaacatcacggcttgtgaaaaagtaaatgaagaacggagaaaagaagatccccaacgaacgcatcaaa |
22824870 |
T |
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| Q |
242 |
acggcggtttcactgctgttcaaacgaatggagaa |
276 |
Q |
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||| |||||||||| |||| |||||||| |||| |
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| T |
22824871 |
acg--ggtttcactgatgtttcaacgaatgcagaa |
22824903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 22984965 - 22985144
Alignment:
| Q |
94 |
aagctcagccccatccaaatttgttttcaaacccaaatcattcctggtttggttattaatcaaagaaattac------actcgaagaaacatcttctctc |
187 |
Q |
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|||||||||| |||||||||||||||| | | ||||||||||| || | ||||| ||||||||||||||||| ||||| ||||||||| | || |
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| T |
22984965 |
aagctcagcctcatccaaatttgtttttagagccaaatcattcttgatctggttgttaatcaaagaaattacactcggactcggagaaacatcaccactt |
22985064 |
T |
|
| Q |
188 |
gtgaaccagcaaacgaagaacggagaaaagaggatccccaacgaaagcatcaaaacggcggtttcactgctgttcaaacgaa |
269 |
Q |
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| T |
22985065 |
gtgaacaagtaaacaaagaatggagaaaagaggattcccaaagaaagcatgaaaac--aggtttcactgctgatccaacgaa |
22985144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 22804191 - 22804256
Alignment:
| Q |
209 |
ggagaaaagaggatccccaacgaaagcatcaaaacggcggtttcactgctgttcaaacgaatggagaa |
276 |
Q |
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|||||||| | |||||||||||||||||||||| | |||||||||||||||| |||||||| |||| |
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| T |
22804191 |
ggagaaaataagatccccaacgaaagcatcaaa--gagggtttcactgctgttccaacgaatgcagaa |
22804256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 22804181 - 22804121
Alignment:
| Q |
206 |
aacggagaaaagaggatccccaacgaaagcatcaaaacggcggtttcactgctgttcaaacga |
268 |
Q |
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||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||| ||||| |
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| T |
22804181 |
aacggagaaaagaagatccccaacaaaagcatcaaaac--aggtttcactgatgttccaacga |
22804121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 39461545 - 39461582
Alignment:
| Q |
14 |
atggacatcagaagaggaagcggcactcaaagctggag |
51 |
Q |
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| T |
39461545 |
atggacatcagaagaggaagcggcacttaaagctggag |
39461582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 38813184 - 38813240
Alignment:
| Q |
14 |
atggacatcagaagaggaagcggcactcaaagctggagtagtcaagcatgggatggg |
70 |
Q |
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|||| |||| |||||||||| |||||||||||||||||| ||||| |||||| |||| |
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| T |
38813184 |
atggtcatcggaagaggaagtggcactcaaagctggagttgtcaaacatggggtggg |
38813240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 39454025 - 39454081
Alignment:
| Q |
14 |
atggacatcagaagaggaagcggcactcaaagctggagtagtcaagcatgggatggg |
70 |
Q |
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||||||||||||||||||||| || || ||||||||||| | |||||||||| |||| |
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| T |
39454025 |
atggacatcagaagaggaagcagctcttaaagctggagttgccaagcatggggtggg |
39454081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 15715 - 15659
Alignment:
| Q |
14 |
atggacatcagaagaggaagcggcactcaaagctggagtagtcaagcatgggatggg |
70 |
Q |
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||||||||||||||||||||| || || ||||||||||| | |||||||||| |||| |
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| T |
15715 |
atggacatcagaagaggaagcagctcttaaagctggagttgccaagcatggggtggg |
15659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 39409694 - 39409639
Alignment:
| Q |
15 |
tggacatcagaagaggaagcggcactcaaagctggagtagtcaagcatgggatggg |
70 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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| T |
39409694 |
tggacatcagaagaggaagcggcgagtaaagctggagttgtcaagcatggggtggg |
39409639 |
T |
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