View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_36 (Length: 283)
Name: NF6914_low_36
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 81 - 255
Target Start/End: Original strand, 52708513 - 52708687
Alignment:
| Q |
81 |
taatttctttcatttaggtaagtttctcaggatgtttttgggtccaattaatgttcgtgcctctcgcaaggatgttcagcttaaggttaaagaggaatac |
180 |
Q |
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| T |
52708513 |
taatttctttcatttaggtaagtttctcaggatgtttttgggtccaattaatgttcgtgcctctcgcaaggatgttcagcttaaggttaaagaggaatac |
52708612 |
T |
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| Q |
181 |
aatagttacagggtaatttctactacttgcattcaaattaccccaacttcttcacttgcaatccgttgcatgtaa |
255 |
Q |
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| T |
52708613 |
aacagttacagggtaatttctactacttgcattcaaattacctcaacttcttcacttccaatccgttgcatgtaa |
52708687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 52708459 - 52708488
Alignment:
| Q |
27 |
tttctttctttcttaattaattacttccac |
56 |
Q |
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| T |
52708459 |
tttctttctttcttaattaattacttccac |
52708488 |
T |
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