View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6914_low_38 (Length: 274)
Name: NF6914_low_38
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_38 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 4598987 - 4598740
Alignment:
| Q |
10 |
attattctatagtagaatttatcaatgaagcgatggatagggctcaacgtgcctctgctataattcttaacacttgtaatgaacttgagaatgatgtatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598987 |
attattctatagtagaatttatcaatgaagcgatgaatagggct-accgtgcctctgctataattcttaacacttgtaatgaacttgagaatgatgtatt |
4598889 |
T |
|
| Q |
110 |
gaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtacc |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598888 |
gaatgttctctccagtatgttcccttgtatttatgccattggccctttatcttcgtttttaaatcaaagtcaacaaaagcatttggcatctttaggtacc |
4598789 |
T |
|
| Q |
210 |
aatctttggaaagaagataccaagtgtcttgactggcttgaatcaaatg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4598788 |
aatctttggaaagaagataccaagtgtcttgactggcttgaatccaatg |
4598740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 256
Target Start/End: Complemental strand, 4586401 - 4586207
Alignment:
| Q |
62 |
ctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatct |
161 |
Q |
| |
|
||||||| | ||| |||| |||| | ||||||||||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4586401 |
ctctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatgttctctccactaagttcccttctatttatgccattggccctttatca |
4586302 |
T |
|
| Q |
162 |
tcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
||||||||||||||||||| |||||| || || ||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
4586301 |
tcatttttaaatcaaagtccacaaaaccacttagcatctttaagtacaaatctttggaaagaggataccaagtgtcttgattggcttgaatcaaa |
4586207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 4580181 - 4580006
Alignment:
| Q |
78 |
aacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaa |
177 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||| |||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4580181 |
aacacttctaatgaacttgagaaggatgtaatgaatgctctctccactgtgttcccttgtattcatgctattggccctttatcttcgtttttaaatcaaa |
4580082 |
T |
|
| Q |
178 |
gtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||| | |||| |||||| |||||||| | |||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
4580081 |
gtccagaaaaccatttgacatctttaagcaccaatttttggaaagaagataccaagtgtctttattggcttgaatc |
4580006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 4613083 - 4613276
Alignment:
| Q |
60 |
gcctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttat |
159 |
Q |
| |
|
||||||||| | ||| |||| |||| |||||||||||| || |||||| |||||||||||||| | | ||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
4613083 |
gcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggtcctttat |
4613182 |
T |
|
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||||| |||||| |||||||| |||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4613183 |
cttcacttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataccaagtgtcttgattggcttgaatc |
4613276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 4571739 - 4571543
Alignment:
| Q |
60 |
gcctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttat |
159 |
Q |
| |
|
||||||||| | ||| |||| |||| ||||||||||||||| |||||| |||| ||| |||| | | ||||||| | ||||||| ||||||||||||| |
|
|
| T |
4571739 |
gcctctgcttttatttttaatacttctaatgaacttgagaaggatgtaatgaaagttatctcttcgacgttccctaatgtttatgctattggccctttat |
4571640 |
T |
|
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
||||| |||||| |||||||| ||| || || |||||| |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4571639 |
cttcacttttaagtcaaagtccacagaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttgattggcttgaatcaaa |
4571543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 4255986 - 4256182
Alignment:
| Q |
60 |
gcctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctcca---ctatgttcccttgtatttatgccattggccctt |
156 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| ||||| | ||| ||||||| |||| |
|
|
| T |
4255986 |
gcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctctctattattctatgttctcttgtttgtataccattggacctt |
4256085 |
T |
|
| Q |
157 |
tatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
|| ||||||| |||||||||| || ||| | || |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4256086 |
taccttcattattaaatcaaactccacatagtcacttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatc |
4256182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 4259535 - 4259711
Alignment:
| Q |
76 |
ttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatca |
175 |
Q |
| |
|
||||||||| | |||||||||||| ||||||| ||||||| |||| |||||||||||| | | ||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
4259535 |
ttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggacctttaccttcattattaaatca |
4259634 |
T |
|
| Q |
176 |
aagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaat |
252 |
Q |
| |
|
|| || ||| || || ||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4259635 |
aactccacataatcacctggcatcgttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaat |
4259711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 4266559 - 4266727
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||| | |||||||||||| ||| || |||||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
4266559 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaa |
4266658 |
T |
|
| Q |
188 |
gcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
4266659 |
tcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaa |
4266727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 4299189 - 4299379
Alignment:
| Q |
63 |
tctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatctt |
162 |
Q |
| |
|
|||||||| || |||| |||| | |||||||||||| ||||||| |||||| ||||| |||||||||||| | | ||| | ||||| |||||| ||| |
|
|
| T |
4299189 |
tctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggacctttacctt |
4299288 |
T |
|
| Q |
163 |
catttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
|||| |||||||||| || ||| || || |||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4299289 |
cattattaaatcaaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaatc |
4299379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 253
Target Start/End: Complemental strand, 4557889 - 4557699
Alignment:
| Q |
63 |
tctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatctt |
162 |
Q |
| |
|
|||||| | ||| |||| |||| || |||||||||||| |||||| |||||||||||||| | | |||||| ||||| || || ||||||||||||| |
|
|
| T |
4557889 |
tctgcttttatttttaatacttctagtgaacttgagaaggatgtaatgaatgttctctcctcgacgttcccaaatatttgtggtatcggccctttatctt |
4557790 |
T |
|
| Q |
163 |
catttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
|| |||||| |||||||| ||| || || |||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4557789 |
cacttttaagtcaaagtccacataatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatc |
4557699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 253
Target Start/End: Complemental strand, 4517060 - 4516895
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| || | || | |||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
4517060 |
atgaacttgagaatgatgtaataaatgctctatctattaagatcccttctatttatgccattggccctttaacttcatttttgaatcaaagtccgcaaaa |
4516961 |
T |
|
| Q |
188 |
gcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
| ||||| ||| ||||| | ||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
4516960 |
taacttggcttctataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaatc |
4516895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 4458334 - 4458166
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| | |||||||||||| ||| || |||||||||| || |||| ||| |||||||||||| |||||| |
|
|
| T |
4458334 |
atgaacttgagagtgatgttatgaatactctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaaa |
4458235 |
T |
|
| Q |
188 |
gcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|| |||||||||||| | ||||||||||||||||| |||| || |||||||| |||||||||||||| |
|
|
| T |
4458234 |
tcacttggcatctttaaattccaatctttggaaagaatatactaaatgtcttgagtggcttgaatcaaa |
4458166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 4568790 - 4568630
Alignment:
| Q |
81 |
acttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtc |
180 |
Q |
| |
|
|||| |||||||||||||| ||||||| | || | ||| || | || | |||||| |||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
4568790 |
acttataatgaacttgagagtgatgtagtaaaggctctatctattaagatcccttctatttacgccattggccctttatcttcgtttttgaatcaaaatc |
4568691 |
T |
|
| Q |
181 |
aacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttga |
241 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
4568690 |
cccaaaagcacttggcttctttaggttccaatctttggaaagaagatatgaaatgtcttga |
4568630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 4622906 - 4622714
Alignment:
| Q |
61 |
cctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatc |
160 |
Q |
| |
|
|||||||||| ||| |||| |||| |||||||||||||| ||||| |||||| |||| | |||||||| | | | ||| || |||| |||||| | |
|
|
| T |
4622906 |
cctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttcccatctttgtataccgttggacctttacc |
4622807 |
T |
|
| Q |
161 |
ttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
|||||| |||||||||| || ||| || || ||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
4622806 |
ttcattattaaatcaaactccacataatcacttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaatc |
4622714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 4514571 - 4514682
Alignment:
| Q |
145 |
ccattggccctttatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactg |
244 |
Q |
| |
|
|||||||||| || |||| ||||| |||||||||| |||||| || |||| |||||||||| |||||||||||||||||||||| || |||||||| || |
|
|
| T |
4514571 |
ccattggcccatttgcttcgtttttgaatcaaagtccacaaaatcacttggaatctttaggttccaatctttggaaagaagatactaaatgtcttgaatg |
4514670 |
T |
|
| Q |
245 |
gcttgaatcaaa |
256 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4514671 |
gcttgaatcaaa |
4514682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 253
Target Start/End: Complemental strand, 4564453 - 4564285
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||| ||| ||||||| | |||| ||||||| ||||||| |||| | |||| |||||||||||||| ||||||| ||||| |||| || ||||| |
|
|
| T |
4564453 |
atgaactttagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
4564354 |
T |
|
| Q |
188 |
gcat---ttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||| |||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4564353 |
tcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaatc |
4564285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 4470549 - 4470374
Alignment:
| Q |
81 |
acttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtc |
180 |
Q |
| |
|
|||| |||||||||||| | |||||| |||||| |||| |||| ||||||| | | || |||||||| || | ||||| |||||||||||||||| |
|
|
| T |
4470549 |
acttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctatacgccattggtccactttcttcttttttaaatcaaagtc |
4470450 |
T |
|
| Q |
181 |
aacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|||||| ||| | ||||||||| | ||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
4470449 |
cacaaaatcatctagcatctttaaatttcaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaa |
4470374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 4461791 - 4461694
Alignment:
| Q |
159 |
tcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
||||| ||| |||||||||||| |||||| || ||||||||||| | |||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
4461791 |
tcttcttttataaatcaaagtccacaaaatcacctggcatctttaaattccaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaa |
4461694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 4561250 - 4561075
Alignment:
| Q |
81 |
acttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtc |
180 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| | ||| |||||||||||| | | || | ||||| || ||| |||| ||| |||||||||||| |
|
|
| T |
4561250 |
acttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtc |
4561151 |
T |
|
| Q |
181 |
aacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
4561150 |
cacaaaatcacttgacatctttagactgtaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaa |
4561075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 4506537 - 4506428
Alignment:
| Q |
147 |
attggccctttatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggc |
246 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||| || || ||| |||||| | | |||||||||||||| ||||| || ||||| || |||| |
|
|
| T |
4506537 |
attggccctttaacttcatttgtaaatcaaagtccacaaaatcagtttgcaactttagattcaaatctttggaaagaggatactaaatgtctcgaatggc |
4506438 |
T |
|
| Q |
247 |
ttgaatcaaa |
256 |
Q |
| |
|
| |||||||| |
|
|
| T |
4506437 |
tggaatcaaa |
4506428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 3172408 - 3172312
Alignment:
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|||| ||||||| |||||||| ||||| || ||||||||||||| | | |||||||||||||||||||| || |||||||| ||||||||| |||| |
|
|
| T |
3172408 |
cttcgtttttaagtcaaagtccgcaaaatcacttggcatctttagattctaatctttggaaagaagatactaaatgtcttgaatggcttgaaacaaa |
3172312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 4575054 - 4574879
Alignment:
| Q |
81 |
acttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtc |
180 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| | ||| |||||||||||| | | || | ||||| || ||| |||| ||| |||||||||||| |
|
|
| T |
4575054 |
acttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaagtc |
4574955 |
T |
|
| Q |
181 |
aacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|||||| | ||| ||||||||| | |||||||||||||||||||| || |||||||| ||| |||||||||| |
|
|
| T |
4574954 |
cacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggattgaatcaaa |
4574879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 4592974 - 4592805
Alignment:
| Q |
87 |
aatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaa |
186 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||||||| ||||||| |||| | |||| |||||||||||||| ||||||| ||||| |||| || ||||| |
|
|
| T |
4592974 |
aatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaa |
4592875 |
T |
|
| Q |
187 |
---agcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
| || |||| ||||| ||| |||| | |||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
4592874 |
tccatcaattggattcttttggttccaacatatggaaagaagatactgagtgtcttaaatggcttgaatc |
4592805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 4617765 - 4617596
Alignment:
| Q |
87 |
aatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaa |
186 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||||||| | | | |||| ||||||| | |||||||||||| ||||||| ||||| |||| || ||||| |
|
|
| T |
4617765 |
aatgaacttgagagtgatgtaataaatgctctctcctccacaattccttctatttatccgattggccctttaccttcattattaaaacaaactccacaaa |
4617666 |
T |
|
| Q |
187 |
agcat---ttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||| |||| ||||||| | |||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4617665 |
ttcatcaattggactctttagattccaacctttggaaagaagatacagagtgtcttgattggcttgaatc |
4617596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 4626612 - 4626526
Alignment:
| Q |
166 |
ttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaat |
252 |
Q |
| |
|
|||| |||| ||||| |||||| || ||| |||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
4626612 |
ttttgaatcgaagtccacaaaaccagttgatatctttaggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaat |
4626526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 4835509 - 4835571
Alignment:
| Q |
189 |
catttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaa |
251 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||||| || |||||||| ||||||||| |
|
|
| T |
4835509 |
catttggcatctttaggttccgatctttggaaggaagatacaaaatgtcttgaatggcttgaa |
4835571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 4489807 - 4489916
Alignment:
| Q |
147 |
attggccctttatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggc |
246 |
Q |
| |
|
|||||||| || ||||| |||||| |||||| || | |||| || ||| |||||||| | |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4489807 |
attggcccattttcttcttttttagatcaaattccagaaaatcacttgaaatctttagactctaatctttggaaagaagatactaaatgtcttgaatggc |
4489906 |
T |
|
| Q |
247 |
ttgaatcaaa |
256 |
Q |
| |
|
|||||||||| |
|
|
| T |
4489907 |
ttgaatcaaa |
4489916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 4503849 - 4503954
Alignment:
| Q |
147 |
attggccctttatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggc |
246 |
Q |
| |
|
||||| || ||| |||| ||| |||||||||||| |||||| | ||| ||||||||| | |||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4503849 |
attggtccattagcttcttttgtaaatcaaagtccacaaaatgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgattggc |
4503948 |
T |
|
| Q |
247 |
ttgaat |
252 |
Q |
| |
|
|||||| |
|
|
| T |
4503949 |
ttgaat |
4503954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 4481360 - 4481264
Alignment:
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|||| |||||||||||||||| |||| | || |||| | | |||| | |||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
4481360 |
cttcttttttaaatcaaagtccacaatatcacttggaaacattagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaa |
4481264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 4602416 - 4602363
Alignment:
| Q |
200 |
tttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||||||| |||| || |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4602416 |
tttaggttccaacctctggaaagaagatactgagtgtcttgaatggcttgaatc |
4602363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 24103738 - 24103570
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||| | |||||||||||| ||| || |||||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
24103738 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaaa |
24103639 |
T |
|
| Q |
188 |
gcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
24103638 |
tcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaa |
24103570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 24107114 - 24107018
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaaca |
184 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| |||||||||||| | | ||| | ||||| |||||| ||||||| |||||||||| |||||| |
|
|
| T |
24107114 |
atgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggacctttaccttcattattaaatcaaattcaaca |
24107018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 3087187 - 3086991
Alignment:
| Q |
60 |
gcctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttat |
159 |
Q |
| |
|
||||||||||| || ||||||||| | |||||||||||| ||||||| |||||| || | || ||||||||| | ||| ||||||| || ||| |
|
|
| T |
3087187 |
gcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggaccattac |
3087088 |
T |
|
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatcaaa |
256 |
Q |
| |
|
||||| | ||||||||| | ||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3087087 |
cttcactactaaatcaaacttcacataatcacttggcatctttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatcaaa |
3086991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 4082 - 4240
Alignment:
| Q |
88 |
atgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaaa |
187 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| |||||||||||| | | ||| ||||||| |||||| ||||||| |||||||||| || ||| || |
|
|
| T |
4082 |
atgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggacctttaacttcattattaaatcaaactccacataa |
4181 |
T |
|
| Q |
188 |
gcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttg |
249 |
Q |
| |
|
|| | |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4182 |
tcacta---atctttaggttccaatctttggaaagaagataccaagtgtcttgagtggcttg |
4240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 16685729 - 16685825
Alignment:
| Q |
157 |
tatcttcatttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
|||||||| |||||| |||||||| ||| || || ||| || |||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16685729 |
tatcttcacttttaagtcaaagtccacataatcagttgtcaagtttaagtatcaatctttggaaataagataccaagtgtcttgattggcttgaatc |
16685825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 20863235 - 20863401
Alignment:
| Q |
87 |
aatgaacttgagaatgatgtattgaatgttctctccactatgttcccttgtatttatgccattggccctttatcttcatttttaaatcaaagtcaacaaa |
186 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||| |||||||||||| | | || ||||||||||||| ||| |||||||||||||||| ||| | |
|
|
| T |
20863235 |
aatgagcttgagagtgatgttatgaatgttctctattctatgttcccttctctatacaccattggcccttttgtttcttttttaaatcaaagtccacaga |
20863334 |
T |
|
| Q |
187 |
agcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
| || ||||| ||||||| | | | ||||||||||||||| || | ||||||| ||||||||||| |
|
|
| T |
20863335 |
atcacttggcgtctttagattcaagtctttggaaagaagacactgaatgtcttgcatggcttgaatc |
20863401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 1674911 - 1674800
Alignment:
| Q |
145 |
ccattggccctttatcttcatttttaaatcaaagtcaacaaaagcat---ttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttga |
241 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| || ||||| ||| || | |||||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
1674911 |
ccattggccctttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatactgagtgtcttga |
1674812 |
T |
|
| Q |
242 |
ctggcttgaatc |
253 |
Q |
| |
|
||||||||||| |
|
|
| T |
1674811 |
atggcttgaatc |
1674800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 3183 - 3277
Alignment:
| Q |
160 |
cttcatttttaaatcaaagtcaacaaaagcatttggcatcttt-aggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatc |
253 |
Q |
| |
|
||||||| |||| ||||| || ||| || || |||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
3183 |
cttcattattaagtcaaactccacataatcacttggaatcttttaggttccaatctttggaaagaagataccaagtgtcttgaatggctcgaatc |
3277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 148 - 37
Alignment:
| Q |
145 |
ccattggccctttatcttcatttttaaatcaaagtcaacaaaagcat---ttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttga |
241 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| || ||||| ||| || | |||||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
148 |
ccattggccctttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatactgagtgtcttga |
49 |
T |
|
| Q |
242 |
ctggcttgaatc |
253 |
Q |
| |
|
||||||||||| |
|
|
| T |
48 |
atggcttgaatc |
37 |
T |
|
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