View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6914_low_39 (Length: 270)
Name: NF6914_low_39
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_39 |
 | |
|
| [»] chr6 (12 HSPs) |
| |
|
| [»] scaffold0133 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0144 (1 HSPs) |
| |
|
| [»] scaffold0256 (1 HSPs) |
| |
|
| [»] scaffold0230 (1 HSPs) |
| |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16787616 - 16787885
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787616 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
16787715 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787716 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
16787815 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16787816 |
tccagtacagaaatccattgatgttcgtcgcttgtaaatcgcaaactgcttcccaatactttagcagcaa |
16787885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16796818 - 16797087
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16796818 |
ccatctgtaaattacctctagatgtaacaagtccattagccatccaaagatgaatgagatgttccttcaccatttcaaaatccttaggaaaaacagcgca |
16796917 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| || |||||||||||| |||||| |
|
|
| T |
16796918 |
gaaagtaaaacatggcctcaatgacaatttcaagttaaagtagcttagtgtcaaagcagacatgatacgatcaacctgaggtaaattccaaaattcactt |
16797017 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
16797018 |
tccagtacagaaatccattgatgttcgtcgcttgtaaagcgcaaactgcttcccaatactttagcagcaa |
16797087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16987103 - 16987372
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
16987103 |
ccatctgtaaattacctctagatgtaacaagtccattagccatccaaagatgaatgagatcttccttcaccatttcaaaatccttaggaaaaacagcaca |
16987202 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
16987203 |
gaaggtaaaacatggccttagtgacaatttcatgttgaagtagcttagtctcaaagcagaaatgataggatcatcctcaggtaaattccaaatctcactt |
16987302 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||||||| ||||||||||||||||||||| || | | | |||||||||||||||||||||||||||| |
|
|
| T |
16987303 |
tccagtacagaaatccattgatgttcgtcagtttcacgttgcaaactgcttcccaatactttagcagcaa |
16987372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16657661 - 16657930
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| | |||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
16657661 |
ccatctgtaagtttcctctagatataacaagtccattagccatccaaagtttaatgagttcttccttatccatttcaaaatccttaggaaaaacagcaca |
16657760 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| | | | ||| |||| ||||||||||||||||||| |
|
|
| T |
16657761 |
aaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactt |
16657860 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
16657861 |
tccaccacagaaatccattgatgttcatcgcttttaaagcgtaaaaggcttcccaatactttagcagcaa |
16657930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16780748 - 16780973
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
16780748 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcaca |
16780847 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||| ||||||| |
|
|
| T |
16780848 |
aaaagtaaaacacggccttaaggacaaattcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataacttccaaagctcactt |
16780947 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttc |
226 |
Q |
| |
|
||| || ||||| |||||||||||| |
|
|
| T |
16780948 |
tcctttacagaaagccattgatgttc |
16780973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16868512 - 16868243
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
16868512 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagttgaatgaaaaattccttttccatttcaaaatccttaggaaaaacagcaca |
16868413 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| | | | ||| || | ||||||||||||||||||| |
|
|
| T |
16868412 |
aaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacatggttatcatctgctaaattccaaaactcactt |
16868313 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|||| | |||| ||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
16868312 |
tccaccacagaagtccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaa |
16868243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 17069155 - 17069424
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| | || |
|
|
| T |
17069155 |
ccatctgtaaattacctctagatgtaacaaatccattagccatccaaagatgaatgagcctttccttcaccattacaaaatccttaggaaaaacaacaca |
17069254 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||| | || || ||||||||||||||||||| |
|
|
| T |
17069255 |
gaaagtaaaacatggcctcaatgacaatttcaagttatagtagcttagtctcaaagcagacatgacagggttctcatcgtctaaattccaaaactcactt |
17069354 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
17069355 |
tccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaa |
17069424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 18806677 - 18806483
Alignment:
| Q |
32 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
131 |
Q |
| |
|
||||||||||| ||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| |||||| || |||||| |
|
|
| T |
18806677 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18806578 |
T |
|
| Q |
132 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattgatgttc |
226 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| |||||||||||| |
|
|
| T |
18806577 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttc |
18806483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 18873671 - 18873477
Alignment:
| Q |
32 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
131 |
Q |
| |
|
||||||||||| ||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| |||||| || |||||| |
|
|
| T |
18873671 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18873572 |
T |
|
| Q |
132 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattgatgttc |
226 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| |||||||||||| |
|
|
| T |
18873571 |
aaattaaagtagctgagtctcaatacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttc |
18873477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16843455 - 16843584
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||| ||| |||||||| || | || || |||||| ||||||||||||||||| | || ||||||||||||| ||||||| || ||||| ||||| || |
|
|
| T |
16843455 |
ccatctctaaatttcctctggaggaaataaatccatttgccatccaaagatgaattacatcttccttcaccattacaaaatctttaggaaatacagcaca |
16843554 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaattt |
130 |
Q |
| |
|
|| |||||||||||| |||| || ||||| |
|
|
| T |
16843555 |
aaatgtaaaacatggcttcaatgataattt |
16843584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 16837537 - 16837598
Alignment:
| Q |
209 |
agaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|||||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
16837537 |
agaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaa |
16837598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 18870587 - 18870507
Alignment:
| Q |
32 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaaca |
112 |
Q |
| |
|
|||||||| || ||||||||| || || | |||||||||||||||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
18870587 |
tccattagtcaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaacctcacaaaaggtaaaaca |
18870507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 12498 - 12767
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| || |
|
|
| T |
12498 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagttgaatgagattttccttcaccatttcataatctttgggaaaaacagcaca |
12597 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
12598 |
gaaagtaaaacatggcctcaatgacaatttcaagttaaaatagcttagtctcaaagcagacatgataggatcaacctcaggtaaactccaaaactcactt |
12697 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|| |||| ||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
12698 |
tctagtacagaaatccattgatgttcgtcacttgtaaagcacaaactgcttcctaatactttagcagcaa |
12767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 8156 - 8425
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| || |
|
|
| T |
8156 |
ccatctgtaaatttcctctagatgtaacaagaccattagccatccaaagatgaatgagattttccttaaccatttcaaaacccttaggaaaaacagcaca |
8255 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||| ||||||||||| |||||| |
|
|
| T |
8256 |
gaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacatgatagaatcaacctcaggcaaattccaaaattcactt |
8355 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
8356 |
tccagtacagaaatccattgatgttcgttgcttgtacagcacaaactgctacccaatactttagcagcaa |
8425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17704 - 17929
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
17704 |
ccatctgtaagtttcctcttgatgtaacaagtccattagccatccaaaatggaatgatattttccttcaccatttcaaaatccttaggaaaaacagtaca |
17803 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| |||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||| | |||||||| ||||||||||| ||||||| |
|
|
| T |
17804 |
aaaagtaaaacagggcctcaaggacgatttcaaattaaagtagcttagtctcaaagcagacattatagggttatcctcagataaattccaaacctcactt |
17903 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttc |
226 |
Q |
| |
|
||| || ||||| |||||||||||| |
|
|
| T |
17904 |
tcctttacagaaagccattgatgttc |
17929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38939871 - 38939602
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
38939871 |
ccatctgtaagtttcctcttgatgtaacaagtccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcaca |
38939772 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||| |
|
|
| T |
38939771 |
aaaattaaaacatggcctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagctcactt |
38939672 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||| || ||||| |||||||||||| || ||| |||| || ||| ||||||||||||||| ||||||| |
|
|
| T |
38939671 |
tcctttacagaaaaccattgatgttcctcacttttaaagcgcaaaaggcttcccaatactttggcagcaa |
38939602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7053778 - 7053517
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||| || |
|
|
| T |
7053778 |
ccatctgtaaatttcctctagatgtaagaagtccattagccatccaaagatgaatgaggcattccttatgtatctcaaaatctttgggaaaaacagcaca |
7053679 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| | |||||| |||||||| | ||||||||| ||| ||||||| || |||||| |||||||||| |||| |||||||| |||||||||||||| ||| |
|
|
| T |
7053678 |
aaaagaaaaacaaggcctcaatggcaatttcaaattatagtagctcagcctcaaagcagacatgattggattatcctcagataaattccaaaacttgctt |
7053579 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatacttt |
262 |
Q |
| |
|
||| |||||||| ||||||||||| || | | ||||||| ||| |||||| |||||||| |
|
|
| T |
7053578 |
tcctttatagaaagccattgatgtttctcacgtttaaatcgtaaaaggcttcctaatacttt |
7053517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 37139 - 37408
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| || |
|
|
| T |
37139 |
ccatctgtaagtttcctctagatgcaacaagtccattagccatccaaagttgaatgagattttccttcaccattttaaaatccttaggaaaaacagcaca |
37238 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| | | ||| |||| ||||||||||||||||||| |
|
|
| T |
37239 |
aaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacttggttatcatcagctaaattccaaaactcactt |
37338 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||| |
|
|
| T |
37339 |
tccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaa |
37408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 8800 - 9069
Alignment:
| Q |
1 |
ccatctgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| || |
|
|
| T |
8800 |
ccatctgtaaatttcctctagatgtaacaagtccattagccatccaaagttgaatgagattttccttcaccattttaaaatctttaggaaaaacagcaca |
8899 |
T |
|
| Q |
101 |
gaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactt |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8900 |
aaaagtaaaacatggtctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgataggatcatcctcagttaaattccaaagctcactt |
8999 |
T |
|
| Q |
201 |
tccagtatagaaatccattgatgttcgtcgcttgtaaatcgaaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
||| | ||| | |||||||||||| || ||| |||| | ||| |||||||||||||| ||||||| |
|
|
| T |
9000 |
tccttgacagagagccattgatgttcctcacttttaaagcacaaaagacttcccaatactttggcagcaa |
9069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 13377745 - 13377965
Alignment:
| Q |
6 |
tgtaagtttcctctagatgtaacaagtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaagg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || | |
|
|
| T |
13377745 |
tgtaagtttcctctagatgtaacaagtccattagccatccaaagtagaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaag |
13377844 |
T |
|
| Q |
106 |
taaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| || ||||||| |
|
|
| T |
13377845 |
taaaacatggcctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagcttactttcctt |
13377944 |
T |
|
| Q |
206 |
tatagaaatccattgatgttc |
226 |
Q |
| |
|
|| ||||| |||||||||||| |
|
|
| T |
13377945 |
tacagaaagccattgatgttc |
13377965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 4352 - 4591
Alignment:
| Q |
32 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
131 |
Q |
| |
|
||||||||||| ||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| ||||||| || ||||| |
|
|
| T |
4352 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataatttt |
4451 |
T |
|
| Q |
132 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattgatgttcgtcgc |
231 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| |||||||||||| || | |
|
|
| T |
4452 |
aaattaaagtagctgagtctcaaaacaaacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattgatgttcctcac |
4551 |
T |
|
| Q |
232 |
ttgtaaatcg-aaaactgcttcccaatactttagcagcaa |
270 |
Q |
| |
|
|| |||| || |||| |||||| | |||||| ||||||| |
|
|
| T |
4552 |
ttttaaagcgcaaaaaggcttcctagtactttggcagcaa |
4591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 9033 - 9227
Alignment:
| Q |
32 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
131 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||||||||||||||||| |||||||| || || || |||||||| ||||||| || |||||| |
|
|
| T |
9033 |
tccattagccaaccaaagatggatcagtgcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataatttc |
9132 |
T |
|
| Q |
132 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattgatgttc |
226 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| ||| ||| || ||||| |||||||||||| |
|
|
| T |
9133 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactgtcctttacagaaagccattgatgttc |
9227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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