View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_40 (Length: 264)
Name: NF6914_low_40
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 17605886 - 17605660
Alignment:
| Q |
21 |
agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17605886 |
agaatggagcacccttaatgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggg |
17605787 |
T |
|
| Q |
121 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17605786 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
17605687 |
T |
|
| Q |
221 |
tgaaaatcatgttactcttcggtgatg |
247 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
17605686 |
tgaaattcatgttactcttcggtgatg |
17605660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 17632475 - 17632262
Alignment:
| Q |
21 |
agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
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||||| ||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17632475 |
agaatggagcacccttaatgaagcatgaccaggctattgataatctagcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggg |
17632376 |
T |
|
| Q |
121 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
220 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | | || |||||||||| |||||||||| |
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| T |
17632375 |
gggtcaggaactaaatgtgaatataaagggtattcaggtgatggaggcgaagaaaaaaggcttggtgatagtagatgcctataaggtgactggggggata |
17632276 |
T |
|
| Q |
221 |
tgaaaatcatgtta |
234 |
Q |
| |
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|||| |||||||| |
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| T |
17632275 |
ggaaattcatgtta |
17632262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 16475351 - 16475563
Alignment:
| Q |
21 |
agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
| |
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||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
16475351 |
agaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatgaaaaaggcttgaagaaggtggagatgga |
16475450 |
T |
|
| Q |
121 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
220 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| |||||||||| |
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| T |
16475451 |
ggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggata |
16475550 |
T |
|
| Q |
221 |
tgaaaatcatgtt |
233 |
Q |
| |
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|||| ||||||| |
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| T |
16475551 |
ggaaattcatgtt |
16475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 16480209 - 16480421
Alignment:
| Q |
21 |
agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
| |
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||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
16480209 |
agaatggagcacccttaatgaagcatgaccaaactattgataatctagcctctcagaacttgtagtagaatgaaaaaggcttgaagaaggtggagatgga |
16480308 |
T |
|
| Q |
121 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
220 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| |||||||||| |
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| T |
16480309 |
ggatccggaactaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggata |
16480408 |
T |
|
| Q |
221 |
tgaaaatcatgtt |
233 |
Q |
| |
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|||| ||||||| |
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|
| T |
16480409 |
ggaaattcatgtt |
16480421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 17646015 - 17645815
Alignment:
| Q |
21 |
agaatagagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | |||||||||||| |||||| |||||||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
17646015 |
agaatggagcagccttagtgaagcatgataaggctattgataatcaggcctcttgggacttgtagtataaggaaaaaggtttgaagaaattggagacgga |
17645916 |
T |
|
| Q |
121 |
ggatcgggaactaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggata |
220 |
Q |
| |
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||||| || | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| ||||||||| ||||||| |
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| T |
17645915 |
ggatcaggtattaaatgtgaatagaaagggtattcaggtgatgaaggtgatgaaaaaaggcttggtgacagtaaaggtctatgaggtgattgaggggata |
17645816 |
T |
|
| Q |
221 |
t |
221 |
Q |
| |
|
| |
|
|
| T |
17645815 |
t |
17645815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 17675919 - 17676023
Alignment:
| Q |
22 |
gaatagagcacccttagtgaagcatgatcaaa-ctattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacgga |
120 |
Q |
| |
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||||||||||||| | |||||||||| || |||||||||| || |||||||||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
17675919 |
gaatagagcaccccaaatgaagcatgaggaagtctattgataacctgacctcttaggacttgtaaaagaaggaaatatgcttgaagaaagtggagacgga |
17676018 |
T |
|
| Q |
121 |
ggatc |
125 |
Q |
| |
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||||| |
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| T |
17676019 |
ggatc |
17676023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 17663658 - 17663729
Alignment:
| Q |
54 |
ctattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatc |
125 |
Q |
| |
|
||||||| || || ||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||| |
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|
| T |
17663658 |
ctattgaaaacctgtcctcttagtacttgtaaaagaaggaaaaatgcctgaagaaagtggagacggaggatc |
17663729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 20750972 - 20751073
Alignment:
| Q |
27 |
gagcacccttagtgaagcatgatcaaactattgataatctatcctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatcg |
126 |
Q |
| |
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||||||||| | |||||||||| | |||||||| |||| ||| |||| | ||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
20750972 |
gagcaccctcaatgaagcatgagaagtctattgattatctggcctattagaatttgtaaaagaaggaaaaatacttgaagaaagtggagatggaggatcg |
20751071 |
T |
|
| Q |
127 |
gg |
128 |
Q |
| |
|
|| |
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|
| T |
20751072 |
gg |
20751073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 17650377 - 17650321
Alignment:
| Q |
69 |
cctcttaggacttgtagtagaaggaaaaaggcttgaagaaagtggagacggaggatc |
125 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
17650377 |
cctcttaggacttgtaaaagaaggaaatatacctgaagaaagtggagacggaggatc |
17650321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 20751105 - 20751196
Alignment:
| Q |
145 |
aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaat-catgttact |
236 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||| |||||||| ||| |||||||||| || ||||||| |||||| ||||||||| |
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|
| T |
20751105 |
aaagggtattcaggtgatgaaagcaaagagaaaaggctcggtgatagttgagggctataaggtgactgaggggata-gaaaatccatgttact |
20751196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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