View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_46 (Length: 256)

Name: NF6914_low_46
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_46
NF6914_low_46
[»] chr1 (2 HSPs)
chr1 (13-241)||(49978766-49978994)
chr1 (123-179)||(49952122-49952178)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 49978766 - 49978994
Alignment:
Q  13 aatatctgtactcttcaccatcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49978766 aatatctgtactcttcaccatcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggca 49978865  T
Q  113 gcaatatgtggcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49978866 gcaatatgtggcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgattt 49978965  T
Q  213 caagatggtatgtaatggagtgatatttt 241  Q
    |||||||||||||||||||||||||||||    
T  49978966 caagatggtatgtaatggagtgatatttt 49978994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 49952178 - 49952122
Alignment:
Q  123 gcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggtttt 179  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  49952178 gcaggtggtggtgagtcaagttacacttgcataggtgcaccggttagacaaggtttt 49952122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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