View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_47 (Length: 256)

Name: NF6914_low_47
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_47
NF6914_low_47
[»] chr1 (25 HSPs)
chr1 (1-131)||(49004599-49004734)
chr1 (122-239)||(26440724-26440843)
chr1 (148-248)||(32813265-32813365)
chr1 (129-248)||(37926420-37926541)
chr1 (131-248)||(45044542-45044661)
chr1 (131-248)||(49811509-49811628)
chr1 (152-239)||(8346379-8346466)
chr1 (150-248)||(2581935-2582033)
chr1 (150-248)||(3000339-3000437)
chr1 (150-248)||(9474858-9474956)
chr1 (150-248)||(47452302-47452400)
chr1 (148-248)||(27564717-27564817)
chr1 (152-248)||(38595176-38595272)
chr1 (152-248)||(44548358-44548454)
chr1 (152-248)||(51898665-51898761)
chr1 (150-248)||(38632303-38632401)
chr1 (156-237)||(13414787-13414868)
chr1 (151-239)||(43153-43241)
chr1 (152-248)||(37649220-37649316)
chr1 (160-248)||(41758835-41758923)
chr1 (152-239)||(23597082-23597169)
chr1 (132-248)||(41608475-41608593)
chr1 (150-248)||(50630478-50630576)
chr1 (132-230)||(6260870-6260970)
chr1 (178-238)||(48489348-48489408)
[»] chr5 (18 HSPs)
chr5 (148-248)||(26720534-26720634)
chr5 (148-248)||(26990283-26990383)
chr5 (148-239)||(2740292-2740383)
chr5 (148-239)||(28177793-28177884)
chr5 (150-248)||(33149620-33149718)
chr5 (130-248)||(6679696-6679816)
chr5 (148-248)||(15409592-15409692)
chr5 (124-248)||(2252150-2252276)
chr5 (150-248)||(40145427-40145525)
chr5 (151-248)||(14831835-14831932)
chr5 (131-248)||(31008987-31009106)
chr5 (150-248)||(18520866-18520964)
chr5 (150-248)||(35785219-35785317)
chr5 (150-248)||(36732924-36733022)
chr5 (152-248)||(20073498-20073594)
chr5 (150-248)||(13811672-13811770)
chr5 (137-199)||(16327906-16327970)
chr5 (153-237)||(42414295-42414379)
[»] chr7 (23 HSPs)
chr7 (129-248)||(26296641-26296762)
chr7 (148-248)||(35522894-35522994)
chr7 (148-233)||(21234419-21234504)
chr7 (151-248)||(46033783-46033880)
chr7 (150-248)||(3694387-3694485)
chr7 (148-245)||(19436172-19436269)
chr7 (148-225)||(46374807-46374884)
chr7 (148-239)||(3434580-3434671)
chr7 (150-248)||(8080365-8080463)
chr7 (150-248)||(38267060-38267158)
chr7 (150-248)||(3784015-3784113)
chr7 (148-248)||(31735902-31735995)
chr7 (150-239)||(7389409-7389498)
chr7 (126-248)||(41915735-41915859)
chr7 (148-248)||(19329860-19329960)
chr7 (127-248)||(22343356-22343479)
chr7 (150-248)||(35137553-35137651)
chr7 (150-240)||(36361903-36361993)
chr7 (150-248)||(38837237-38837335)
chr7 (151-248)||(32951475-32951572)
chr7 (151-248)||(40957728-40957825)
chr7 (174-248)||(36208217-36208291)
chr7 (150-240)||(36362046-36362136)
[»] chr6 (12 HSPs)
chr6 (127-248)||(31976243-31976366)
chr6 (150-248)||(32869698-32869796)
chr6 (151-248)||(11427639-11427736)
chr6 (148-248)||(31110743-31110841)
chr6 (152-235)||(15832599-15832682)
chr6 (150-248)||(22880640-22880738)
chr6 (160-248)||(29857857-29857945)
chr6 (150-248)||(17598574-17598672)
chr6 (152-248)||(4231570-4231666)
chr6 (168-239)||(23128118-23128189)
chr6 (173-248)||(30870057-30870132)
chr6 (148-234)||(9379708-9379794)
[»] chr8 (22 HSPs)
chr8 (148-248)||(4854845-4854945)
chr8 (148-248)||(10621069-10621169)
chr8 (150-248)||(12831067-12831165)
chr8 (150-248)||(34012278-34012376)
chr8 (148-248)||(43414563-43414663)
chr8 (125-235)||(15048177-15048288)
chr8 (151-239)||(15197354-15197442)
chr8 (150-248)||(14547942-14548040)
chr8 (150-234)||(10284627-10284711)
chr8 (152-248)||(37038501-37038597)
chr8 (148-248)||(20074924-20075016)
chr8 (150-248)||(504103-504201)
chr8 (150-248)||(1179922-1180020)
chr8 (178-248)||(15258911-15258981)
chr8 (174-248)||(38229472-38229546)
chr8 (150-248)||(40423925-40424023)
chr8 (128-234)||(32032721-32032828)
chr8 (132-248)||(30479456-30479574)
chr8 (150-248)||(8841414-8841512)
chr8 (174-248)||(9122229-9122303)
chr8 (150-248)||(44507069-44507167)
chr8 (150-239)||(23122588-23122677)
[»] chr3 (28 HSPs)
chr3 (148-239)||(41189755-41189846)
chr3 (125-248)||(11347904-11348029)
chr3 (148-239)||(26141523-26141614)
chr3 (148-239)||(51419351-51419442)
chr3 (148-248)||(20764897-20764997)
chr3 (150-248)||(53982031-53982129)
chr3 (150-239)||(48587082-48587171)
chr3 (150-239)||(49607434-49607523)
chr3 (150-248)||(26754715-26754813)
chr3 (150-248)||(33644220-33644318)
chr3 (150-248)||(52629320-52629418)
chr3 (150-239)||(11907391-11907480)
chr3 (150-239)||(33118842-33118931)
chr3 (152-248)||(17470427-17470523)
chr3 (148-248)||(24699936-24700036)
chr3 (148-239)||(47531883-47531974)
chr3 (137-199)||(13898086-13898150)
chr3 (152-248)||(9563021-9563117)
chr3 (160-239)||(31456719-31456798)
chr3 (150-248)||(8076413-8076511)
chr3 (150-248)||(30801715-30801813)
chr3 (148-239)||(35965773-35965856)
chr3 (150-248)||(48375688-48375786)
chr3 (150-248)||(54868877-54868975)
chr3 (152-240)||(27714881-27714969)
chr3 (148-200)||(35536644-35536696)
chr3 (150-198)||(36707456-36707504)
chr3 (127-248)||(45058535-45058657)
[»] chr2 (21 HSPs)
chr2 (148-239)||(40613893-40613984)
chr2 (130-239)||(36168834-36168945)
chr2 (151-240)||(5574478-5574567)
chr2 (152-239)||(42257215-42257302)
chr2 (125-239)||(38273133-38273249)
chr2 (150-248)||(13438363-13438461)
chr2 (150-248)||(17473040-17473138)
chr2 (150-239)||(10249373-10249462)
chr2 (150-248)||(9058500-9058598)
chr2 (150-248)||(28863475-28863573)
chr2 (150-248)||(30915483-30915581)
chr2 (150-248)||(32505630-32505728)
chr2 (132-248)||(43490121-43490239)
chr2 (150-248)||(28381637-28381735)
chr2 (150-248)||(33436082-33436180)
chr2 (131-248)||(45097717-45097836)
chr2 (150-248)||(4060705-4060803)
chr2 (150-248)||(19930802-19930900)
chr2 (150-248)||(26891486-26891584)
chr2 (148-234)||(33436229-33436315)
chr2 (150-248)||(40701498-40701596)
[»] chr4 (17 HSPs)
chr4 (150-248)||(11511444-11511542)
chr4 (150-248)||(24995089-24995187)
chr4 (148-248)||(31910210-31910310)
chr4 (168-248)||(41823920-41824000)
chr4 (131-248)||(55475190-55475309)
chr4 (150-248)||(480429-480527)
chr4 (150-248)||(6034064-6034162)
chr4 (148-248)||(40574797-40574897)
chr4 (148-248)||(50052410-50052510)
chr4 (150-248)||(48183031-48183129)
chr4 (148-248)||(48647708-48647808)
chr4 (150-248)||(41236367-41236465)
chr4 (150-248)||(42044349-42044447)
chr4 (150-248)||(54473515-54473613)
chr4 (131-248)||(29547941-29548060)
chr4 (132-248)||(8343145-8343263)
chr4 (153-234)||(29977908-29977989)
[»] scaffold0237 (1 HSPs)
scaffold0237 (160-248)||(4059-4147)
[»] scaffold1268 (1 HSPs)
scaffold1268 (152-248)||(911-1007)
[»] scaffold1267 (1 HSPs)
scaffold1267 (152-248)||(911-1007)
[»] scaffold0316 (1 HSPs)
scaffold0316 (178-240)||(17102-17164)
[»] scaffold0321 (1 HSPs)
scaffold0321 (152-248)||(10091-10187)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 49004734 - 49004599
Alignment:
Q  1 ttttttggattccaaatacatcttagttttaatgtcagcacaatttttcatnnnnnnn-----tatagtaaagaaattacaaaagactatgcaaacacaa 95  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||            |||||||||||||||||||||||||||||||||||||    
T  49004734 ttttttggattccaaatacatcttagttttaatttcagcacaatttttcattaaaaaaaaaaatatagtaaagaaattacaaaagactatgcaaacacaa 49004635  T
Q  96 tctacaatttgttggagaattccggttttattaata 131  Q
    ||||||||||||||||||||||||||||||||||||    
T  49004634 tctacaatttgttggagaattccggttttattaata 49004599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 26440724 - 26440843
Alignment:
Q  122 tttattaatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaa 219  Q
    ||||||||  |||||| |||||||| |  ||||||| |||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||| ||| ||    
T  26440724 tttattaaatgagttaggatagatagacatccttagatgacaatacaccctttaacacccacacaaaaatctgacacgtggccacatggatcccgcataa 26440823  T
Q  220 gcacattttctcttttctct 239  Q
    ||||| ||||||||||||||    
T  26440824 gcacactttctcttttctct 26440843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 32813265 - 32813365
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||||||||||||| |||||| |||||||||| | |||||| || ||||||||||| ||||||||||||||  ||||||    
T  32813265 atccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacactttctcttttctctcctcttct 32813364  T
Q  248 c 248  Q
    |    
T  32813365 c 32813365  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 37926541 - 37926420
Alignment:
Q  129 atagagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatt 226  Q
    |||||||||||||| ||| ||  | ||||||| ||||| | | |||||||||||||||||||| |||||||||||| ||||||||| | ||||| ||| |    
T  37926541 atagagttatgatacatagatatctttaggtggcaatacatcttttaacacccacataaaaatctgacacgtggccacatggatcccgtacaagtacact 37926442  T
Q  227 ttctcttttctcttttcttctc 248  Q
    |||||||||||||| |||||||    
T  37926441 ttctcttttctcttctcttctc 37926420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 45044661 - 45044542
Alignment:
Q  131 agagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||| ||| ||  ||||||||| ||||| ||| ||| ||||||| | |||||| ||||| || ||| |||||| || |||||| ||||||||    
T  45044661 agagttatgatacatacatttccttaggtggcaatacaccatttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaaacacatttt 45044562  T
Q  229 ctcttttctcttttcttctc 248  Q
    |||||||||||| |||||||    
T  45044561 ctcttttctcttctcttctc 45044542  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 49811628 - 49811509
Alignment:
Q  131 agagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||||||| |  |||||||||||||||| ||| ||| ||| ||||| |||||| |||||||| |||  || ||  | ||||||||||| |||    
T  49811628 agagttatgatagatagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacacgtagccatatagactccgcacaagcacacttt 49811529  T
Q  229 ctcttttctcttttcttctc 248  Q
    |||||||||||  |||||||    
T  49811528 ctcttttctctcctcttctc 49811509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 8346466 - 8346379
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||| ||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| |||||||||||||| ||||||||||||||    
T  8346466 ttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacactttctcttttctct 8346379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 2581935 - 2582033
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||| ||||||||  |||||||    
T  2581935 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttcttttttctctcctcttctc 2582033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 3000339 - 3000437
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || | ||||||||| ||||||||||||||  |||||||    
T  3000339 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctc 3000437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 9474956 - 9474858
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || |||||| |||| ||||||||||||||  |||||||    
T  9474956 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttctcttttctctcctcttctc 9474858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 47452400 - 47452302
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||  |||| ||||||| ||||||||| |||||| | |||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  47452400 ccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 47452302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 27564817 - 27564717
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||| ||| ||||||||| |||||| ||||||||   | | |||| || ||||||||||| ||||||||||||||  ||||||    
T  27564817 atccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctcctcttct 27564718  T
Q  248 c 248  Q
    |    
T  27564717 c 27564717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 38595176 - 38595272
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || | ||||||||| ||||||||||||||  |||||||    
T  38595176 ttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctc 38595272  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 44548454 - 44548358
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||| ||| | ||||||| |||||| |||||||| | | | |||| || ||||||||||| |||||||||||||| ||||||||    
T  44548454 ttaggtggcaatacaccatttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcttcttctc 44548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 51898761 - 51898665
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||| ||| ||||  |||||||    
T  51898761 ttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctcctcttctc 51898665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 38632401 - 38632303
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||||||| ||||| |||||| |||||||| | | | |||| || ||||||||||| ||| ||||||||||  |||||||    
T  38632401 ccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttttcttttctctcctcttctc 38632303  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 13414787 - 13414868
Alignment:
Q  156 gtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttct 237  Q
    ||||||||| ||||||| ||||||||| |||||| | |||||| | | | |||| ||  |||||||||||||||||||||||    
T  13414787 gtgacaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttct 13414868  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 43153 - 43241
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    |||||| ||||||| | ||||| ||||||||| |||||| |||||||| | | | ||||  | ||||||||||| ||||||||||||||    
T  43153 cttaggagacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacactttctcttttctct 43241  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 37649220 - 37649316
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| || |||| ||||||||| |||||| |||||||||| | | || || | ||||||||||| |||| |||||||||  |||||||    
T  37649220 ttaggtggcaatacactctttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcacactttcccttttctctcctcttctc 37649316  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 41758835 - 41758923
Alignment:
Q  160 caatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| ||||||| ||| ||||| |||||| |||||||| | | |||||| || |||||| |||| ||||||||||||||  |||||||    
T  41758835 caatacaccctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttctcttttctctcctcttctc 41758923  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 23597169 - 23597082
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||| ||||| || |||| | |||||||||||||| |||||||||||| | | || | ||||||| |||| ||| ||||||||||    
T  23597169 ttaggtggcaatacactctttgatacccacataaaaatctgacacgtggccacgttgaccttgcacaaacacactttatcttttctct 23597082  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 41608593 - 41608475
Alignment:
Q  132 gagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttc 229  Q
    ||||||||||| |||||  |||||||||| ||||| |||| || |||| |||| |||||| ||||| ||||||  ||||| || | ||||| ||| ||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacactttc 41608494  T
Q  230 tcttttctcttttcttctc 248  Q
    |||||  |||| |||||||    
T  41608493 tctttcttcttctcttctc 41608475  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 50630478 - 50630576
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| | |||||   ||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  50630478 ccttaggtggcaatacatcctttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 50630576  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 6260870 - 6260970
Alignment:
Q  132 gagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttc 229  Q
    ||||||||||||||| ||  |||||||||  |||| |||| | ||||||||||||||||| | ||| |||| | | |||| || ||| ||||||||||||    
T  6260870 gagttatgatagatagatatccttaggtggtaatacacccctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacattttc 6260969  T
Q  230 t 230  Q
    |    
T  6260970 t 6260970  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 48489348 - 48489408
Alignment:
Q  178 ccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctc 238  Q
    ||||| |||||| ||||| |||| | | ||||||| ||||||||||||||||| |||||||    
T  48489348 ccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacattttctattttctc 48489408  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 26720534 - 26720634
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||||||||| ||| |||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  26720534 atccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctcttctcttct 26720633  T
Q  248 c 248  Q
    |    
T  26720634 c 26720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 26990283 - 26990383
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||||||||| ||| |||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  26990283 atccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctcttctcttct 26990382  T
Q  248 c 248  Q
    |    
T  26990383 c 26990383  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 2740292 - 2740383
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||||||||||||    
T  2740292 atccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctct 2740383  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 28177793 - 28177884
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||| |||||||||| | |||||| || |||||| |||| ||||||||||||||    
T  28177793 atccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacactttctcttttctct 28177884  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 33149718 - 33149620
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||  |||| ||||||| ||||||||| ||||||||||||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  33149718 ccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 33149620  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 6679696 - 6679816
Alignment:
Q  130 tagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattt 227  Q
    ||||||||||||| ||| |  || ||||||| ||||| ||| ||| ||||||||| |||||| |||||||||| | |||||| || |||||| |||||||    
T  6679696 tagagttatgatacatagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacattt 6679795  T
Q  228 tctcttttctcttttcttctc 248  Q
    ||||||||||||  |||||||    
T  6679796 tctcttttctctcctcttctc 6679816  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 15409692 - 15409592
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||||||||| |  |||| ||||||||| |||||| |||||||| ||| |||||| || ||||||||||| | ||||||||||||  ||||||    
T  15409692 atccttaggtgacaatacattctttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactctctcttttctctcctcttct 15409593  T
Q  248 c 248  Q
    |    
T  15409592 c 15409592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 2252276 - 2252150
Alignment:
Q  124 tattaatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagc 221  Q
    |||| |||||||||||||| |||||  |||||||||| ||||| |||| || ||||||||| |||||| ||||| ||||||  ||||| || |||||||     
T  2252276 tatttatagagttatgatacataaacatccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagt 2252177  T
Q  222 acattttctcttttctcttttcttctc 248  Q
    ||| |||||||||  |||| |||||||    
T  2252176 acactttctctttcttcttctcttctc 2252150  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 40145427 - 40145525
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||||||| ||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  40145427 ccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 40145525  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 14831835 - 14831932
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||| ||||| ||||||| |||||||||||||||| |||||||| | | | ||||||| ||||||||||| ||||| |||| |||  |||||||    
T  14831835 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttcttttttttctcctcttctc 14831932  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 31008987 - 31009106
Alignment:
Q  131 agagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||| |||||  |||||||||||||||| |  |||  ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| |||    
T  31008987 agagttatgatacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 31009086  T
Q  229 ctcttttctcttttcttctc 248  Q
    || ||| ||||| |||||||    
T  31009087 ctatttcctcttctcttctc 31009106  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 18520964 - 18520866
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| |||||||||| |||  |||||||    
T  18520964 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctcctcttctc 18520866  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 35785219 - 35785317
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||||||||| |||||| |||||||| |   | ||||||| |||||| |||| ||||||||||||||  |||||||    
T  35785219 ccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacactttctcttttctctcatcttctc 35785317  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 36733022 - 36732924
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||  ||||| ||||||| ||||||||| |||||| |||||| | | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  36733022 ccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 36732924  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 20073594 - 20073498
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||| |||||||| ||||||| |||| ||||||||||| |  |||||| || | |||| |||||||||||||| ||||| ||| ||||  |||||||    
T  20073594 ttagatgacaatacaccctttgacactcacataaaaatcttgcacgtgaccacgtggaccctgcacaagcacactttctatttcctctcctcttctc 20073498  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 13811672 - 13811770
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| | | ||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| |||||||| |||||  |||||||    
T  13811672 ccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttctctctcctcttctc 13811770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 16327906 - 16327970
Alignment:
Q  137 atgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtg 199  Q
    |||||||||||||  ||||||||| ||||| | || || |||||||||||||||| |||||||||    
T  16327906 atgatagataaatatccttaggtggcaatacatccattgacacccacataaaaatctgacacgtg 16327970  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 42414379 - 42414295
Alignment:
Q  153 taggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttct 237  Q
    |||||| ||||| ||||||| ||||||||| |||||| |||||||| | |   |||| || ||||||||||| ||| ||||||||    
T  42414379 taggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttatcttttct 42414295  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 26296641 - 26296762
Alignment:
Q  129 atagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatt 226  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||  ||||| || |||||||| ||||    
T  26296641 atagagttatgatacatagacatccttaggtgacaatataccctttaacatccacataaaaatctgatacgtggccatatggaccccgcacaagcgcatt 26296740  T
Q  227 ttctcttttctcttttcttctc 248  Q
    |||||||||||||  |||||||    
T  26296741 ttctcttttctctcctcttctc 26296762  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 35522894 - 35522994
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||| ||| ||||| ||| ||||||||||||| |||||| ||||||||||||  |||||||| ||||||||||| |||||||||||||| |||||||    
T  35522894 atccttaagtggcaatacaccatttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctcttttctctcttcttct 35522993  T
Q  248 c 248  Q
    |    
T  35522994 c 35522994  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 21234419 - 21234504
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctctt 233  Q
    ||||||||||||||||| ||||||| |||| |||| ||||||||||||||| ||| |||| | || ||||||||||||||||||||    
T  21234419 atccttaggtgacaatacaccctttgacactcacacaaaaatttgacacgtagccacatgtaccccgcacaagcacattttctctt 21234504  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 46033880 - 46033783
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||| | |||| |  | ||||||||| ||||||||||||||||  |||||||    
T  46033880 cttaggtggcaatacaccctttaacacccacataaaaatctgacacgtggtcacatgaactccgcacaagcatattttctcttttctctcctcttctc 46033783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 3694387 - 3694485
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||| ||||||||||||| |||||| |||||||| | |   ||||||| ||||||||||| ||||||||||||||  |||||||    
T  3694387 ccttaggtgacaatacaccttttaacacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttttctctcctcttctc 3694485  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 19436269 - 19436172
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttctt 245  Q
    ||||||||||||||||| ||| ||| ||||||||| |||||| |||||||| | | | ||||||| ||| ||||||| ||||||||||||||| ||||    
T  19436269 atccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttctcttttctcttctctt 19436172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 46374884 - 46374807
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacat 225  Q
    ||||||||||| ||| | ||||||||||||||||| |||||| |||||||||||| |||||| || ||||||||||||    
T  46374884 atccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacat 46374807  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 3434580 - 3434671
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||  |||||||| | | | ||||||| ||||||||||| ||||||||||||||    
T  3434580 atccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacactttctcttttctct 3434671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 8080463 - 8080365
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||| |||||||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  8080463 ccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 8080365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 38267060 - 38267158
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| ||||||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  38267060 ccttatgtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 38267158  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 3784015 - 3784113
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| | | ||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  3784015 ccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 3784113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 31735902 - 31735995
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| || |||||||||||||| |||       ||||||||| ||||||||| ||||||||||| ||||||||||||||  ||||||    
T  31735902 atccttaggtggcaatacactctttaacacccacacaaa-------cacgtggccacatggatcccgcacaagcacactttctcttttctctcctcttct 31735994  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 7389409 - 7389498
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||| ||||| || |||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||    
T  7389409 ccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctct 7389498  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 41915735 - 41915859
Alignment:
Q  126 ttaatagagttatgatagataa--atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcac 223  Q
    ||||||||||||||||| ||||  | ||||||||| ||||| |||| || ||||| ||| |||||| ||||| ||||||  ||||| || ||||||| ||    
T  41915735 ttaatagagttatgatacataaacacccttaggtggcaatacaccccttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtac 41915834  T
Q  224 attttctcttttctcttttcttctc 248  Q
    | |||||||||  |||| |||||||    
T  41915835 actttctctttcttcttctcttctc 41915859  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 19329860 - 19329960
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||| ||| ||||||||| |||||| ||||||||   | | |||| || ||||||||||| ||||||||||||||  ||||||    
T  19329860 atccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctcctcttct 19329959  T
Q  248 c 248  Q
    |    
T  19329960 c 19329960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 22343356 - 22343479
Alignment:
Q  127 taatagagttatgatagataa--atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcaca 224  Q
    |||||||||||||||| ||||  | ||||||||| ||||| |||| || ||||||||| |||||| ||||| ||| ||  ||||| || ||||||| |||    
T  22343356 taatagagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtaca 22343455  T
Q  225 ttttctcttttctcttttcttctc 248  Q
     |||||||||  |||| |||||||    
T  22343456 ctttctctttcttcttctcttctc 22343479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 35137553 - 35137651
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| | |||||| | | | |||| || |||||| |||| ||||||||||||||  |||||||    
T  35137553 ccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacactttctcttttctctcctcttctc 35137651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 36361993 - 36361903
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctctt 240  Q
    ||||||||| ||||| | ||||| ||||||||| |||||| |||||||| | | | |||| ||  |||||||||| |||||||||||||||    
T  36361993 ccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctctt 36361903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 38837237 - 38837335
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||  ||||| ||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  38837237 ccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 38837335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 32951572 - 32951475
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| |||||||| | ||||||||| ||||| |||||| | |||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  32951572 cttagatgacaatacatcctttaacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 32951475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 40957728 - 40957825
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||| ||||| || |||| | ||||||| |||||| |||||||| | | | ||||||| | ||||||||| ||||||||||||||  |||||||    
T  40957728 cttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacactttctcttttctctcatcttctc 40957825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 36208217 - 36208291
Alignment:
Q  174 acacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| |||||  ||||| |||| | | |||| |||||||||||||||||||||||| ||||  |||||||    
T  36208217 acacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctc 36208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 36362046 - 36362136
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctctt 240  Q
    |||||||||  |||| | ||||| ||||||||| |||||| |||||||| | | | |||| ||  |||||||||| |||||||||||||||    
T  36362046 ccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctctt 36362136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 31976243 - 31976366
Alignment:
Q  127 taatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcaca 224  Q
    |||||||||||||||| ||| |  |||||||||| ||||||||||||||||||||||| |||||| |||||||||| | |||| | || |||||||||||    
T  31976243 taatagagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcaca 31976342  T
Q  225 ttttctcttttctcttttcttctc 248  Q
     ||||||||||||||  |||||||    
T  31976343 ctttctcttttctctcctcttctc 31976366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 32869698 - 32869796
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  32869698 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 32869796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 11427639 - 11427736
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||| ||||| | ||||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  11427639 cttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 11427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 31110841 - 31110743
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||| |||| ||||  ||||| ||||||||  || |||||| |||||||||||||| ||||||||||||||  ||||||    
T  31110841 atccttaggtggcaatacaccctttgacactcaca--aaaatctgacacgtaaccacatggaccctgcacaagcacactttctcttttctctactcttct 31110744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 15832599 - 15832682
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctctttt 235  Q
    ||||||||||||| | | ||| ||||||||| ||||||||||||||| | | | ||||||||||||||  ||||||||||||||    
T  15832599 ttaggtgacaataaatcatttgacacccacacaaaaatttgacacgtagtcacgtggatcctgcacaaatacattttctctttt 15832682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 22880738 - 22880640
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||| | |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  22880738 ccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 22880640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 29857857 - 29857945
Alignment:
Q  160 caatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| ||| ||||||||||||| |||||| |||||||| |   | ||||||| ||| ||||||| ||||||||||||||| |||||||    
T  29857857 caatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctcttctcttctc 29857945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 17598574 - 17598672
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| | | ||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  17598574 ccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 17598672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 4231570 - 4231666
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| |||| ||  |||||||| |||||| ||||||||||||  ||||| || ||||||| ||| |||||||||  |||| |||||||    
T  4231570 ttaggtggcaatacaccccttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctc 4231666  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 23128189 - 23128118
Alignment:
Q  168 cctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||| ||||||||| |||||| |||||||| | | | |||||||  |||||||||| ||||||||||||||    
T  23128189 cctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctct 23128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 30870057 - 30870132
Alignment:
Q  173 aacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||| |||||||| | ||| |||| | |||||| || ||||||||||||||||||||| ||||  |||||||    
T  30870057 aacacccatataaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctc 30870132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 9379794 - 9379708
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttt 234  Q
    |||||||| |||||||| | || || ||||||| | |||||||||||||||||||   ||||||   ||||| ||||||||||||||    
T  9379794 atccttagatgacaatacatcccttgacacccatacaaaaatttgacacgtggccatgtggatctcacacaaacacattttctcttt 9379708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 4854945 - 4854845
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||||||||| |||||||||| ||| | |||||| |||||| |||||||||||||| ||||||||||||||  ||||||    
T  4854945 atccttaggtggcaatacaccctttaacacctacataaaaatctgatatgtggccacatggaccctgcacaagcacactttctcttttctctcctcttct 4854846  T
Q  248 c 248  Q
    |    
T  4854845 c 4854845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 10621169 - 10621069
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||||||  |||| ||||||| ||||||||| |||||| |||||||| ||| ||| ||||| ||||||||||| ||||||||||||||  ||||||    
T  10621169 atccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctcttttctctcctcttct 10621070  T
Q  248 c 248  Q
    |    
T  10621069 c 10621069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 12831067 - 12831165
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  12831067 ccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 12831165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 34012376 - 34012278
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||  |||| ||||||| ||||||||| ||||||||||||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  34012376 ccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 34012278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 43414663 - 43414563
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||| || ||| | ||||||| ||||||||| |||||| | |||||||| | ||||||||| ||||||||||| ||||||||||||||  ||||||    
T  43414663 atccttagatggcaacacaccctttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacactttctcttttctctcctcttct 43414564  T
Q  248 c 248  Q
    |    
T  43414563 c 43414563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 15048288 - 15048177
Alignment:
Q  125 attaatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagca 222  Q
    |||||| ||||||||||| ||| |  |||||||||| ||||| ||||||| ||||| ||| |||||| |||||||| ||| |||||| || |||||||||    
T  15048288 attaattgagttatgatacatagacatccttaggtggcaatacaccctttgacacc-acacaaaaatctgacacgtagccacatggaccccgcacaagca 15048190  T
Q  223 cattttctctttt 235  Q
    || ||||||||||    
T  15048189 cactttctctttt 15048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 15197354 - 15197442
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    |||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||    
T  15197354 cttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctct 15197442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 14547942 - 14548040
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  14547942 ccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 14548040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 10284711 - 10284627
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttt 234  Q
    ||||| ||||||||| || |||| ||||||||| ||||||||||||||| | | | |||| || ||||||||||| |||||||||    
T  10284711 ccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacactttctcttt 10284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 37038501 - 37038597
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||| ||| ||||  |||||||    
T  37038501 ttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctcctcttctc 37038597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 20075016 - 20074924
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| || |||| |||||||||||||||| |||||||        |||| |||||||||||||| ||||||||| ||||| ||||||    
T  20075016 atccttaggtggcaatacactctttgacacccacataaaaatgtgacacg--------tggaccctgcacaagcacactttctctttcctcttctcttct 20074925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 504201 - 504103
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| || |||||||||||  |||||||||||||  |||||||    
T  504201 ccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacattctcttttctctcatcttctc 504103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 1180020 - 1179922
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||  |||| ||||||| ||||||||| |||||| |||||||| | |   ||||| | ||||||||||| ||||||||||||||  |||||||    
T  1180020 ccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttctcttttctctcctcttctc 1179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 15258981 - 15258911
Alignment:
Q  178 ccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||||| ||||| |||| | | |||| |||||||||||||||||||||||| ||||  |||||||    
T  15258981 ccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctc 15258911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 38229472 - 38229546
Alignment:
Q  174 acacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| |||||| ||||| |||| | | ||||| ||| ||||||||||||||||||| ||||| |||||||    
T  38229472 acacccacacaaaaatctgacatgtggtcacgtggattctgtacaagcacattttctctttcctcttctcttctc 38229546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 40424023 - 40423925
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||| ||||| |||||| |||||||| | |   |||| || ||||||||||| ||||||||||||||  |||||||    
T  40424023 ccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcctcttctc 40423925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 32032721 - 32032828
Alignment:
Q  128 aatagagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacat 225  Q
    ||||||||||||||| |||||   ||||||||| ||||| | |||| | || ||||| |||||| ||||| ||||||  |||||||||||||||| |||     
T  32032721 aatagagttatgatacataaacacccttaggtggcaatacatccttga-catccacacaaaaatctgacatgtggccatatggatcctgcacaagtacac 32032819  T
Q  226 tttctcttt 234  Q
    |||||||||    
T  32032820 tttctcttt 32032828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 30479574 - 30479456
Alignment:
Q  132 gagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttc 229  Q
    ||||||||||| |||||   ||||||||| ||||| ||||||| ||| |||||||||||| ||||| |||||   ||||| |  ||||||| ||| ||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacactttc 30479475  T
Q  230 tcttttctcttttcttctc 248  Q
    |||||  |||| |||||||    
T  30479474 tctttcttcttctcttctc 30479456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 8841512 - 8841414
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| || || ||||||| ||||||||| |||||| | |||||| | | | |||| || ||||||||||| ||||||||| ||||  |||||||    
T  8841512 ccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctc 8841414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 9122229 - 9122303
Alignment:
Q  174 acacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| |||||| ||||| || | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  9122229 acacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 9122303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 44507167 - 44507069
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||  |||| || |||||||||||||| |||||| |||||||| | | | |||| || | ||||||| | ||||||||||||||  |||||||    
T  44507167 ccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatactttctcttttctctcatcttctc 44507069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 23122677 - 23122588
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||| ||| ||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| || ||| ||||||| ||||||||||||||    
T  23122677 ccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctcttttctct 23122588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 41189846 - 41189755
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||    
T  41189846 atccttaggtggcaatacatcatttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagcacactttctcttttctct 41189755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 11348029 - 11347904
Alignment:
Q  125 attaatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagca 222  Q
    ||||| |||||||||||| ||| |  |||||||||||||||| | ||||| ||| ||||| |||||| |||||||||||| |||||| |||||| |||||    
T  11348029 attaaaagagttatgatacatagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacacgtggccacatggaccctgcataagca 11347930  T
Q  223 cattttctcttttctcttttcttctc 248  Q
    || ||||||||||||||  |||||||    
T  11347929 cactttctcttttctctcctcttctc 11347904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 26141614 - 26141523
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| ||||||||||||||||| |||||| |||||||||| | |||||| ||  |||||||||| ||||||||||||||    
T  26141614 atccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacactttctcttttctct 26141523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 51419442 - 51419351
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    |||||||| |||||||| | ||||||||||||||| |||||| |||||||||||| ||| || || ||||||||||| ||||||||||||||    
T  51419442 atccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttctcttttctct 51419351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 20764997 - 20764897
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||||||  |||| || |||||||||||||| |||||| |||||||||||| |||||| || | ||||||||| ||||||||||||||  ||||||    
T  20764997 atccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtggccacatggaccccgtacaagcacactttctcttttctctcatcttct 20764898  T
Q  248 c 248  Q
    |    
T  20764897 c 20764897  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 53982031 - 53982129
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  53982031 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 53982129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 48587171 - 48587082
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||| ||||| ||||||| ||||| |||||||||| |||||||| | | | ||||||| ||||||| ||| ||||||||||||||    
T  48587171 ccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttttctct 48587082  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 49607434 - 49607523
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||||||  |||||||||| ||||||||||||||    
T  49607434 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctct 49607523  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 26754715 - 26754813
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||  ||| ||||| |||||| ||||| |||| | |||||| || ||||||||||||||||||||| ||||  |||||||    
T  26754715 ccttaggtggcaatacacccttggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctc 26754813  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 33644220 - 33644318
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||| |||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  33644220 ccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 33644318  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 52629320 - 52629418
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || | ||||||||| ||||||||||||||  |||||||    
T  52629320 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctc 52629418  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11907391 - 11907480
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||||||| || | | ||||| |||| |||||| ||||| |||| |  ||||| || ||||||||||||||||||||||||||    
T  11907391 ccttaggtgacaatacacacctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacattttctcttttctct 11907480  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 33118931 - 33118842
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||| | | | |||||||  || || |||| ||||||||| ||||    
T  33118931 ccttaggtgacaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacactttctctttcctct 33118842  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 17470427 - 17470523
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||| ||||||||||||| |||||| |||||||| | | | |||| ||  |||||||||| ||||||||||||||  |||||||    
T  17470427 ttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctctcatcttctc 17470523  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 24700036 - 24699936
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||| || ||||| ||| ||| |||||||||||||||| || ||||||||| | |||| |||| |||| |||| ||||||||| ||||  ||||||    
T  24700036 atccttagttggcaatacaccttttgacacccacataaaaatctggcacgtggccacgtggaccctgtacaaacacactttctctttcctctcctcttct 24699937  T
Q  248 c 248  Q
    |    
T  24699936 c 24699936  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 47531883 - 47531974
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    |||||||| || ||||| ||| ||||||| ||||| || ||| ||||||||||||  ||| | || ||||||||||| ||||||||||||||    
T  47531883 atccttagatggcaatacaccttttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactttctcttttctct 47531974  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 13898150 - 13898086
Alignment:
Q  137 atgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtg 199  Q
    ||||||||||||  |||||||||| ||||| |||| || |||||||||||||||| |||||||||    
T  13898150 atgatagataaacatccttaggtggcaatacaccccttgacacccacataaaaatctgacacgtg 13898086  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 9563021 - 9563117
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||| |||||||| | ||||| ||| ||| |||||||| |||||||| | | | |||||||||||||| |||| ||||||| ||||||  |||||||    
T  9563021 ttagatgacaatacaacctttgacatccatataaaaatctgacacgtagtcacgtggatcctgcacaaacacactttctctcttctctcctcttctc 9563117  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 31456719 - 31456798
Alignment:
Q  160 caatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||| ||||||| ||||||||| |||||| |||||||| | |   |||| || ||||||||||| ||||||||||||||    
T  31456719 caatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 31456798  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 8076413 - 8076511
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| || || ||||||| ||||||||| |||||| | |||||| | | | |||| || ||||||||||| ||||||||| ||||  |||||||    
T  8076413 ccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctc 8076511  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 30801813 - 30801715
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||||||| |||| ||||||| | ||||||| |||||| ||||| || | |  ||||| ||  |||||||||||||||||||| ||||  |||||||    
T  30801813 ccttaggtgataatacaccctttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctctttcctctcatcttctc 30801715  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 35965856 - 35965773
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||| |||| |||| | ||||| |||||||||||||||| |||||||        ||||||||||||||||||| ||||||||| ||||    
T  35965856 atccttaagtgataatacatcctttgacacccacataaaaatctgacacg--------tggatcctgcacaagcacactttctctttcctct 35965773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 48375786 - 48375688
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| |||| | || | ||| | |||||| ||||  |||| | |||||| || ||||||||||||||||||||| ||||  |||||||    
T  48375786 ccttaggtgacaatacacccctgaaaatccatacaaaaatctgacgtgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctc 48375688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 54868975 - 54868877
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||||||||| |||||| |||||||| |   | |||| || |||||| |||| ||||||||||||||  |||||||    
T  54868975 ccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctcatcttctc 54868877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 27714969 - 27714881
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctctt 240  Q
    |||||||  |||| ||||||| ||||||||| |||||| |||||||| | |   |||| || ||||||||||| |||||||| ||||||    
T  27714969 ttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttctctctt 27714881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35536644 - 35536696
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtgg 200  Q
    ||||||| ||| ||||| ||| ||| |||||||||||||||| ||||||||||    
T  35536644 atccttatgtggcaatacaccatttgacacccacataaaaatgtgacacgtgg 35536696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 36707504 - 36707456
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgt 198  Q
    ||||||||||||||| ||||||| ||| ||||| |||||| ||||||||    
T  36707504 ccttaggtgacaatacaccctttgacatccacacaaaaatctgacacgt 36707456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 45058657 - 45058535
Alignment:
Q  127 taatagagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcaca 224  Q
    |||| ||||||||||| |||||   ||||||||| ||||| |||||| | ||||||||||||||| ||||| ||| ||  ||||| || ||||||| | |    
T  45058657 taattgagttatgatacataaacacccttaggtggcaatacacccttga-cacccacataaaaatctgacatgtgaccatatggaccccgcacaagtata 45058559  T
Q  225 ttttctcttttctcttttcttctc 248  Q
     |||||||||  |||| |||||||    
T  45058558 ctttctctttcttcttctcttctc 45058535  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 40613984 - 40613893
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||| |||||||||||| |||||| || ||||||||||| ||||||||||||||    
T  40613984 atccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctct 40613893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 36168834 - 36168945
Alignment:
Q  130 tagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattt 227  Q
    ||||||||||||| ||| |  ||||||| |||||||| | |||||||| |||||| ||||||||||||||||||| |||||| || ||||||||| | ||    
T  36168834 tagagttatgatacatagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacacgtggccacatggaccccgcacaagcatactt 36168933  T
Q  228 tctcttttctct 239  Q
    ||||||||||||    
T  36168934 tctcttttctct 36168945  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 5574567 - 5574478
Alignment:
Q  151 cttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctctt 240  Q
    |||||||| ||||| ||||||| |||||||||||||||| |||||||| | | | ||||||| ||||||||||| |||||||||||||||    
T  5574567 cttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctt 5574478  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 42257215 - 42257302
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||| ||||| | | ||| |||||||||||||||| |||||||||||| |||||| || ||||||||||| ||||||||||||||    
T  42257215 ttaggtggcaatacatcatttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctct 42257302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 38273249 - 38273133
Alignment:
Q  125 attaatagagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagca 222  Q
    ||||| |||||||||||| ||| |  | ||||| || ||||| ||||||||||||||||| |||||| |||||||| ||| |||||| || |||| ||||    
T  38273249 attaaaagagttatgatacatagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacacgtagccacatggaccccgcactagca 38273150  T
Q  223 cattttctcttttctct 239  Q
    || ||||||||||||||    
T  38273149 cactttctcttttctct 38273133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 13438363 - 13438461
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| | ||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  13438363 ccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 13438461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 17473040 - 17473138
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||| || ||||| ||||||| ||||||||| |||||| |||||||| | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  17473040 ccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 17473138  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 10249462 - 10249373
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctct 239  Q
    ||||||||||||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||    
T  10249462 ccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctct 10249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 9058500 - 9058598
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | |   |||| || ||||||||||| ||||||||||||||  |||||||    
T  9058500 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcctcttctc 9058598  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 28863475 - 28863573
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| |||||||||| |||  |||||||    
T  28863475 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctcctcttctc 28863573  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 30915483 - 30915581
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| || ||||||||||||| |||||||| | | | |||| || | ||||||||| ||||||||||||||  |||||||    
T  30915483 ccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcatcttctc 30915581  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 32505728 - 32505630
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||| ||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||| ||||||||  |||||||    
T  32505728 ccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctattttctctcctcttctc 32505630  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 43490121 - 43490239
Alignment:
Q  132 gagttatgatagataaat--ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttc 229  Q
    ||||||||||| |||||   ||||||||||||||| |||| || ||||||||| |||||| ||||| ||||||  ||||| || ||||||| ||| |||     
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttta 43490220  T
Q  230 tcttttctcttttcttctc 248  Q
    |||||  |||| |||||||    
T  43490221 tctttcttcttctcttctc 43490239  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 28381735 - 28381637
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||  ||||||||| |||||| |||||||| | | ||||||  | ||||||||||| ||||||||||||||  |||||||    
T  28381735 ccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacactttctcttttctctcatcttctc 28381637  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 33436180 - 33436082
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| | |||||| | | | |||| || ||||||||||| ||||||||| ||||  |||||||    
T  33436180 ccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcatcttctc 33436082  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 45097836 - 45097717
Alignment:
Q  131 agagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||| |||||  |||||||||| ||||| | || || ||||||| | |||||| ||||| ||||||  ||||| || ||||||| ||| |||    
T  45097836 agagttatgatacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 45097737  T
Q  229 ctcttttctcttttcttctc 248  Q
    ||||||  |||| |||||||    
T  45097736 ctctttcttcttctcttctc 45097717  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 4060705 - 4060803
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||| ||| ||| ||||| |||||| |||||||| |   | ||||||| ||| ||||||| ||||| ||||||||  |||||||    
T  4060705 ccttaggtgacaatacaccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttcttttttctctcatcttctc 4060803  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 19930900 - 19930802
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||| ||||| |||||| |||||||| | |   |||| || |||||| |||| ||||||||||||||  |||||||    
T  19930900 ccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctcttttctctcctcttctc 19930802  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 26891584 - 26891486
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| |||| |  ||||||||| |||||| ||||| |||| | | |||| |  | ||||||||||||||||||| ||||| |||||||    
T  26891584 ccttaggtggcaatacacccctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacattttctctttcctcttctcttctc 26891486  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 33436229 - 33436315
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttt 234  Q
    |||||||| || ||||| ||| ||| |||||||||||||||| ||||||||| ||   ||||   |||||||||||| |||||||||    
T  33436229 atccttagatggcaatacaccttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacactttctcttt 33436315  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 40701498 - 40701596
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||||||||| |||||| |||||||| |   | |||| || |||||| |||| ||||||||||||||  |||||||    
T  40701498 ccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctcatcttctc 40701596  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 11511542 - 11511444
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| |||||||||||||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||| |||||||    
T  11511542 ccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctcttctcttctc 11511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 24995187 - 24995089
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    |||||| || ||||| ||||||| ||||||||||||||||||||||||| | | | |||| || ||||||||||||||||||||||||||  |||||||    
T  24995187 ccttagatggcaatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttttctctcctcttctc 24995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 31910210 - 31910310
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||||||||| || |||| ||||||||| |||||| |||||| | ||| |||||| || ||||||||||| ||||||||||||||  ||||||    
T  31910210 atccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacactttctcttttctctcatcttct 31910309  T
Q  248 c 248  Q
    |    
T  31910310 c 31910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 41823920 - 41824000
Alignment:
Q  168 cctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| |||||| |||||||| | | |||||| || ||||||||||| |||||||||||||| ||||||||    
T  41823920 cctttaacacccacacaaaaatctgacacgtagtcacatggaccccgcacaagcacactttctcttttctctcttcttctc 41824000  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 55475190 - 55475309
Alignment:
Q  131 agagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||| |||||  |||||||||| ||||| ||||||| ||||||||| |||||| ||||| ||||||  ||||| |||||| ||| ||| |||    
T  55475190 agagttatgatacataaacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacacttt 55475289  T
Q  229 ctcttttctcttttcttctc 248  Q
    ||||||  |||| |||||||    
T  55475290 ctctttcttcttctcttctc 55475309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 480527 - 480429
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || | ||||||||| ||||||||||||||  |||||||    
T  480527 ccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcctcttctc 480429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 6034064 - 6034162
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||||||| ||||||||| |||||| ||||| || | | | ||||||| ||||||||||| ||||||||||||||  |||||||    
T  6034064 ccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctc 6034162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 40574797 - 40574897
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||||||  |||| ||||||| ||||||||| |||||| |||||||  ||  ||||||||| | ||||||||| ||||||||||||||  ||||||    
T  40574797 atccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgctgctacatggatcccgaacaagcacactttctcttttctctcctcttct 40574896  T
Q  248 c 248  Q
    |    
T  40574897 c 40574897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 50052510 - 50052410
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||| ||||  ||||||    
T  50052510 atccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttct 50052411  T
Q  248 c 248  Q
    |    
T  50052410 c 50052410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 48183129 - 48183031
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| ||| ||||| ||||||| ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  48183129 ccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 48183031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 48647808 - 48647708
Alignment:
Q  148 atccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttct 247  Q
    |||||||||| |||||| |||  ||||||||||||||||||| | |||||||| | | ||||  | ||||||||||| ||||||||| ||||  ||||||    
T  48647808 atccttaggtaacaatacacctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctcctcttct 48647709  T
Q  248 c 248  Q
    |    
T  48647708 c 48647708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 41236367 - 41236465
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| ||| ||| ||| ||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  41236367 ccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 41236465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 42044447 - 42044349
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||| ||||| | ||||  ||||||||| |||||| |||||||| | | | |||| || ||||||||||| ||||||||||||||  |||||||    
T  42044447 ccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctc 42044349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 54473613 - 54473515
Alignment:
Q  150 ccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||||||||||| ||| ||| ||||||||| |||||| | |||||| | | | |||| || ||||||||||| ||| ||||||||||  |||||||    
T  54473613 ccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttatcttttctctcctcttctc 54473515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 29548060 - 29547941
Alignment:
Q  131 agagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacatttt 228  Q
    |||||||||||| |||||  |||||||||| ||||| | || || ||||||||| |||||| ||||| ||||||  |||||||| ||| ||| ||| |||    
T  29548060 agagttatgatacataaacatccttaggtggcaatacatcccttgacacccacacaaaaatctgacatgtggccatatggatcccgcataagtacacttt 29547961  T
Q  229 ctcttttctcttttcttctc 248  Q
     |||||  |||| |||||||    
T  29547960 ttctttcttcttctcttctc 29547941  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 8343263 - 8343145
Alignment:
Q  132 gagttatgatagataaa--tccttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttc 229  Q
    ||||||||||| |||||  |||||||||| ||||| | ||||| ||||| |||||||||| ||||| ||||||  ||||| || ||| ||| | | ||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgacacctacataaaaatctgacatgtggccatatggaccccgcataagtatactttc 8343164  T
Q  230 tcttttctcttttcttctc 248  Q
    |||||  |||| |||||||    
T  8343163 tctttcttcttctcttctc 8343145  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 29977908 - 29977989
Alignment:
Q  153 taggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttt 234  Q
    |||||| ||||| |||| |||||||||||| |||||| |||||||| | |  ||||| ||  |||||||||| |||||||||    
T  29977908 taggtggcaatacaccccttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctcttt 29977989  T

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Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4059 - 4147
Alignment:
Q  160 caatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||| ||| ||||||||||||| |||||| |||||||| |   | ||||||| ||| ||||||| ||||||||||||||| |||||||    
T  4059 caatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctcttctcttctc 4147  T

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Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 1007 - 911
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||||||||||| ||||| |||||  |||||||| | | | || |||| ||||||||||| ||||||||| ||||  |||||||    
T  1007 ttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactttctctttcctctcctcttctc 911  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 1007 - 911
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| ||||||||||| ||||| |||||  |||||||| | | | || |||| ||||||||||| ||||||||| ||||  |||||||    
T  1007 ttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactttctctttcctctcctcttctc 911  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17102 - 17164
Alignment:
Q  178 ccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctctt 240  Q
    ||||| |||||| ||||| |||| | |||||| || ||||||||||||||||||||| |||||    
T  17102 ccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctctt 17164  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 10187 - 10091
Alignment:
Q  152 ttaggtgacaatataccctttaacacccacataaaaatttgacacgtggccgcatggatcctgcacaagcacattttctcttttctcttttcttctc 248  Q
    ||||||| ||||| | ||||| ||| |||||||||||| |||||||| | | | |||| |  | ||||||||| ||||||||||||||  |||||||    
T  10187 ttaggtggcaatacatcctttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcacactttctcttttctctcctcttctc 10091  T

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