View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6914_low_48 (Length: 255)
Name: NF6914_low_48
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_48 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0321 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 22581104 - 22580914
Alignment:
| Q |
43 |
attgagtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaactt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22581104 |
attgagtttcttgagaagcaagtcctctctcaaaccctaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaactt |
22581005 |
T |
|
| Q |
143 |
gattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcctcccttaatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22581004 |
gattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcctcccttaatt |
22580914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 7678763 - 7678933
Alignment:
| Q |
52 |
cttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaa-atgtaactaacttcataacaaacaaaattaacttgattacta |
150 |
Q |
| |
|
|||||||| |||||| |||| |||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7678763 |
cttgagaaacaagtcatctccaaaaccctaataacctaatgctaaaatctagcaaaaaatgtaactaacttcataacaaacaaaactaacttgattacta |
7678862 |
T |
|
| Q |
151 |
tgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaacat |
221 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7678863 |
tgtgatcttaaccaaacaaacttgattaagtcacaaatcacttattctaacttgaattaacaaactaacat |
7678933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 22581409 - 22581368
Alignment:
| Q |
4 |
aagttaatgtttcgtctttgaatttgtatgcatccgttaatt |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22581409 |
aagttaatgtttcgtctttgaatttgtatgcatcggttaatt |
22581368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 3755664 - 3755838
Alignment:
| Q |
44 |
ttgagtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttg |
143 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
3755664 |
ttgagttgcttgagaaacaagtgatctctcaaaccctaagaacctaatgctaaaatctagcaaaaatgtaacgaacttcataataaacaaaactaacttg |
3755763 |
T |
|
| Q |
144 |
attactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaa |
218 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755764 |
attactatgtcatcttaaccaaacaaacttgattaagtcactaatcacttattctaacttgaattaacaaactaa |
3755838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 2601762 - 2601929
Alignment:
| Q |
44 |
ttgagtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttg |
143 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||||| ||||||||| || ||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2601762 |
ttgagttgctcgagaaacaagtcatctctcaaaccttaacaacctagtgctaaaaattagcaaaaatgtaactaactt-tcaacaaacaaaactaacttg |
2601860 |
T |
|
| Q |
144 |
attactatgtgatcttaaccaaacaaccttg-attaagtcactaatcacttattctaacttgaattaacaa |
213 |
Q |
| |
|
|||||||| ||| |||| ||||||| |||| ||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
2601861 |
attactatatga--ttaatcaaacaaacttgaattaaatcactaatcaattatgctaacttgaattaacaa |
2601929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 17782341 - 17782376
Alignment:
| Q |
197 |
ctaacttgaattaacaaactaacatcctcccttaatt |
233 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17782341 |
ctaacttgaattaacaa-ctaacatcctcccttaatt |
17782376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 11421771 - 11421920
Alignment:
| Q |
69 |
ctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttgattactatgtgatcttaaccaaaca |
168 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11421771 |
ctctcaaatcctaacaacctaatgctaaaatctagcaaaaatgtaactaacttcataacaaacaaaactaacttgattactatgtgatcttaaccaaaca |
11421870 |
T |
|
| Q |
169 |
accttgattaagtcactaatcacttattctaacttgaattaacaaactaa |
218 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11421871 |
aacatgattaagtcactaatcacttgttctaacttgaattaacaaactaa |
11421920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 33670651 - 33670526
Alignment:
| Q |
44 |
ttgagtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttg |
143 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
33670651 |
ttgagttgcttgagaaacaagtcatctctcaaaccctaacaacataatgctaaaatctagcaaaaatgtaactaatttcataacaaacaaaactaacttg |
33670552 |
T |
|
| Q |
144 |
attactatgtgatcttaaccaaacaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33670551 |
attactatgtgatcttaaccaaacaa |
33670526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 23256544 - 23256364
Alignment:
| Q |
52 |
cttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaat-gtaactaacttcataacaaacaa-aattaacttgattact |
149 |
Q |
| |
|
|||||||| |||||| ||||||||| || ||| |||| ||| |||||||||||||||| ||||| |||| ||||| ||| | || |||||| |||| |
|
|
| T |
23256544 |
cttgagaaacaagtcatctctcaaaacctaactaccttatgctaaaatctagcaaaaacagtaacaaacta-ataaccaactataagcaacttggttaca |
23256446 |
T |
|
| Q |
150 |
atgtgatcttaaccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcctcccttaatt |
233 |
Q |
| |
|
||||| | |||||||||||| |||||||||| ||||||||| ||| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
23256445 |
atgtgtt-ttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaatta--aaaccaacatcctcccttaatt |
23256364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 53977022 - 53976856
Alignment:
| Q |
44 |
ttgagtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttg |
143 |
Q |
| |
|
||||||| | |||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53977022 |
ttgagttgcatgagaaacaagtcatctctcaaaccctaacaacctaatgctaaaatctagca----------taacttcataacaaacaaaattaactta |
53976933 |
T |
|
| Q |
144 |
attactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaaca |
220 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
53976932 |
attagtatgtgatcttaaccaaacaaacttgattaagtcactaatcatttattctaacttgaattaataaactaaca |
53976856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 450569 - 450481
Alignment:
| Q |
132 |
aaaattaacttgattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaactaacat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
450569 |
aaaattaacttgattactatgtgatcttaagcaaacaaa-ttgattaagtcactaatcacttattctaacttgaattaacaaactaacat |
450481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 112286 - 112188
Alignment:
| Q |
61 |
caagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaa-tgtaactaacttcataacaaacaaaattaacttgattactatgtgatct |
158 |
Q |
| |
|
|||||| |||| |||||| || ||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
112286 |
caagtcatctccaaaaccctaataacctaatgctaaaatctaacaaaaaatgtaactaacttcataacaaacaaaactaacttgattactatgtgatct |
112188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 9451052 - 9450929
Alignment:
| Q |
89 |
aatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaattaacttgattactatgtgatcttaaccaaacaaccttg-attaagtcactaa |
187 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||||| |||||| ||||| |||||||||||||||||||| |||| ||||||| |||| ||||| ||||||| |
|
|
| T |
9451052 |
aatgctaaaaacaagcaaaactgtaactaacttt-taacaaccaaaactaacttgattactatgtgat-ttaatcaaacaaacttgaattaaatcactaa |
9450955 |
T |
|
| Q |
188 |
tcacttattctaacttgaattaacaa |
213 |
Q |
| |
|
||| |||| |||||||||| |||||| |
|
|
| T |
9450954 |
tcaattatgctaacttgaaataacaa |
9450929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 4664634 - 4664706
Alignment:
| Q |
142 |
tgattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaa |
214 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
4664634 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaacagatattctaacttgaattaacaaa |
4664706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 28447997 - 28447832
Alignment:
| Q |
52 |
cttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaa-tgtaactaacttcataacaaacaaaat-----taacttgat |
145 |
Q |
| |
|
|||||||| |||||| |||| ||||||| ||| |||| ||| ||||| | ||||||| |||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
28447997 |
cttgagaaacaagtcatctcccaaaccctaactaccttatgctaaaagcaagcaaaatctgtaacaaacttt-taacaaacaaattaaaactaacttgat |
28447899 |
T |
|
| Q |
146 |
tactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaa |
213 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
28447898 |
tactatatgat-ttaaccaacaagacttgattaaatcactaatcaactatactaacttgaattaacaa |
28447832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 16117752 - 16117586
Alignment:
| Q |
47 |
agtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaacaaaat-taacttgat |
145 |
Q |
| |
|
|||| |||||| | |||||| |||||||||||| ||| |||| ||| ||||||| ||||||| ||||| || || |||||||| |||| ||||||||| |
|
|
| T |
16117752 |
agttgcttgaggaacaagtcatctctcaaaccccaactaccttatgctaaaatcaagcaaaaccgtaacaaagtt-ttaacaaactaaatctaacttgat |
16117654 |
T |
|
| Q |
146 |
tactatgtgatcttaaccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaa |
213 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||||| || ||| ||||||||||||| |
|
|
| T |
16117653 |
tactatgtgat-ttaaccaaacaagttttgattaaatcactaatcaactacactatcttgaattaacaa |
16117586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 26454335 - 26454427
Alignment:
| Q |
142 |
tgattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaatta-acaaactaacatcctcccttaatt |
233 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||||| | ||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
26454335 |
tgattactatgtgatcttaatcaaacagttttgactaagtcactgaacacttattcaaacttgaattattaaaactaacttcctcccttaatt |
26454427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 25632807 - 25632714
Alignment:
| Q |
138 |
aacttgattactatgtgatcttaaccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcctcccttaatt |
233 |
Q |
| |
|
|||||| |||||||||| | |||||||||||| |||||||||| ||||||||| ||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25632807 |
aacttggttactatgtgtt-ttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaatta--aaactaacatccttccttaatt |
25632714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 13887 - 13995
Alignment:
| Q |
47 |
agtttcttgagaagcaagtcctctctcaaacccaaacaacctaatgataaaatctagcaaaaatgtaactaacttcataacaaac-aaaattaacttgat |
145 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||| || |||| ||| ||||| | ||||||| |||||| ||||| |||| ||| |||| ||||||||| |
|
|
| T |
13887 |
agttgcttgagaaacaagtcatctctcaaaccctaattaccttatg-taaaaacaagcaaaactgtaacaaacttt-taacgaaccaaaactaacttgat |
13984 |
T |
|
| Q |
146 |
tactatgtgat |
156 |
Q |
| |
|
||||||||||| |
|
|
| T |
13985 |
tactatgtgat |
13995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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