View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6914_low_49 (Length: 252)
Name: NF6914_low_49
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_49 |
 | |
|
| [»] scaffold0378 (2 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 34143512 - 34143271
Alignment:
| Q |
2 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaata |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34143512 |
attcttgagaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaata |
34143413 |
T |
|
| Q |
102 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34143412 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcacgccttggagagaaagaaagcaagtacaagag |
34143313 |
T |
|
| Q |
202 |
acttggattttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34143312 |
acttggattttatctattcctttgctttgatgtgttgtccat |
34143271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 28391644 - 28391412
Alignment:
| Q |
11 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtagcatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28391644 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaagaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtggcatgc |
28391545 |
T |
|
| Q |
111 |
agaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggatt |
210 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391544 |
agaaatcttgtttgcttgttggtaaccaagattgcttttgttaagctgtcaaattctcacgccttggagagaaagaaagcaagtacaagagacttggatt |
28391445 |
T |
|
| Q |
211 |
ttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
28391444 |
ttatctattcctttgctttgatgtgttgtccat |
28391412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 17219162 - 17219238
Alignment:
| Q |
27 |
ttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaatagta |
104 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
17219162 |
ttgttctcaaaattctaagaacgttctcaaaaatctg-tttggacagcttgcaataaag-tgtgacatcatgaatagta |
17219238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 7882158 - 7882260
Alignment:
| Q |
118 |
ttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggattttatcta |
217 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||| |||||| |||| |||||||||||||||||||||||||||| || || ||||||||| | |
|
|
| T |
7882158 |
ttgtttgttagttggcaactaagattgcttgtgttgagctgtagc---ctcacaccttggagagaaagaaagcaagtacaagtga-tttgattttatcca |
7882253 |
T |
|
| Q |
218 |
ttccttt |
224 |
Q |
| |
|
||||||| |
|
|
| T |
7882254 |
ttccttt |
7882260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 17219305 - 17219356
Alignment:
| Q |
172 |
ccttggagagaaagaaagcaagtacaagagacttggattttatctattccttt |
224 |
Q |
| |
|
|||||| | ||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
17219305 |
ccttggtgggaaagaaagcaagtacaagtga-ttggattttatctattccttt |
17219356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 14805720 - 14805479
Alignment:
| Q |
2 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaata |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14805720 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgcgacgtcatgaata |
14805621 |
T |
|
| Q |
102 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14805620 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcacgccttggagagaaagaaagcaagtacaagag |
14805521 |
T |
|
| Q |
202 |
acttggattttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14805520 |
acttggattttatctattcctttgctttgatgtgttgtccat |
14805479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21928762 - 21928705
Alignment:
| Q |
20 |
tggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc |
78 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
21928762 |
tggcagtttgttctcgaaattctaagaacgttttcaaaaatctgc-ttggacagcttgc |
21928705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 27741737 - 27741969
Alignment:
| Q |
11 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtagcatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27741737 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaagaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtggcatgc |
27741836 |
T |
|
| Q |
111 |
agaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggatt |
210 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27741837 |
agaaatcttgtttgcttgttggtaaccaagattgcttttgttaagctgtcaaattctcacgccttggagagaaagaaagcaagtacaagagacttggatt |
27741936 |
T |
|
| Q |
211 |
ttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
27741937 |
ttatctattcctttgctttgatgtgttgtccat |
27741969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 27750918 - 27751150
Alignment:
| Q |
11 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtagcatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27750918 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaagaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtggcatgc |
27751017 |
T |
|
| Q |
111 |
agaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggatt |
210 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751018 |
agaaatcttgtttgcttgttggtaaccaagattgcttttgttaagctgtcaaattctcacgccttggagagaaagaaagcaagtacaagagacttggatt |
27751117 |
T |
|
| Q |
211 |
ttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
27751118 |
ttatctattcctttgctttgatgtgttgtccat |
27751150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 4892292 - 4892051
Alignment:
| Q |
2 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
4892292 |
attcttgtgaaaaatgcttggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgtattaaag-tgtgatatcatgaat |
4892194 |
T |
|
| Q |
101 |
agtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaaga |
200 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
4892193 |
agtaccatgcagaattcttgcttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcacgcattggagacaaagaaagcaagtacaaga |
4892094 |
T |
|
| Q |
201 |
gacttggattttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|| ||| |||||||||||||||| | |||||||| ||||||| |
|
|
| T |
4892093 |
gatttgatttttatctattcctttaccttgatgtgttgtccat |
4892051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 21876426 - 21876646
Alignment:
| Q |
21 |
ggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgct-taaagatgtgacgtcatgaatagtagcatgcagaaatctt |
119 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||| ||||||||| |||| |
|
|
| T |
21876426 |
ggcagattgatctcgaaattctgagaatgttctcaaaaatctgctt-ggacagcttgcaataaag-tgtgacatcatgaatagtaccatgcagaattctt |
21876523 |
T |
|
| Q |
120 |
gtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggattttatctatt |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||| || ||||| | ||||||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
21876524 |
gcttgctagttggcaaccaagattgcttttgtttggctgccatactctcacgtcttggagagaaagaaagcaagtacaagtga-ttgtattttatctatt |
21876622 |
T |
|
| Q |
220 |
cctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
| ||| |||||||| ||||||| |
|
|
| T |
21876623 |
cttttagcttgatgtgttgtccat |
21876646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 16953347 - 16953106
Alignment:
| Q |
2 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
16953347 |
attcttgtgaaaaatgcttggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgtattaaag-tgtgatatcatgaat |
16953249 |
T |
|
| Q |
101 |
agtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaaga |
200 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16953248 |
agtaccatgcagaattcttgcttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcacgccttggagacaaagaaagcaagtacaaga |
16953149 |
T |
|
| Q |
201 |
gacttggattttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
16953148 |
gatttggattttatctattcctttactttgatgtgttgtccat |
16953106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 33272787 - 33272555
Alignment:
| Q |
11 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtagcatgc |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| || |||||| |||||||||||| ||||| |
|
|
| T |
33272787 |
aaaaatgtctggcagcttgttctcgaaattctgagaaagttctcaaaaatctgctttagacaacttgctttaaagtgtgacatcatgaatagtaccatgc |
33272688 |
T |
|
| Q |
111 |
agaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggatt |
210 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
33272687 |
ataattcttgcttgctagttggcaaccaagattgcttttgttgggctgtcaaactctcacgccttggagagaaggaaagcaagtacaggagatttggatt |
33272588 |
T |
|
| Q |
211 |
ttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |
|
|
| T |
33272587 |
ttatctattcctttgccttgatgtgttgtccat |
33272555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 29863386 - 29863329
Alignment:
| Q |
20 |
tggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc |
78 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
29863386 |
tggcagattgttctcgaaattctgagaacattcttaaaaatctg-tttggacaacttgc |
29863329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0378 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0378
Description:
Target: scaffold0378; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 4405 - 4636
Alignment:
| Q |
3 |
ttcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaata |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4405 |
ttcttgtgaaaaatgcctggcatgttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgtattaaa---------tcatgaata |
4495 |
T |
|
| Q |
102 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagag |
201 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
4496 |
gtaccatgcagaattcttgcttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcatgccttggagacaaagaaagcaagtacaa-ag |
4594 |
T |
|
| Q |
202 |
acttggattttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
4595 |
atttggattttatctattcctttaccttgatgtgttgtccat |
4636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0378; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 16884 - 17089
Alignment:
| Q |
2 |
attcttgtgaaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaat |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||| |||||||| |
|
|
| T |
16884 |
attcttgtgaaaaatgtctggcaggttgttctcgaaattctgagaacgctctcaaaaatctgctttggatagcttgtattaaag-tgtgacatcatgaat |
16982 |
T |
|
| Q |
101 |
agtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaaga |
200 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16983 |
agtaccatgcagaattcttgcttgctagttggcaaccaagattgcttttgttgggctgtcaaattctcacgccttggagacaaagaaagcaagtacaaga |
17082 |
T |
|
| Q |
201 |
gacttgg |
207 |
Q |
| |
|
|| |||| |
|
|
| T |
17083 |
gatttgg |
17089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 16285297 - 16285065
Alignment:
| Q |
11 |
aaaaatgcctggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc-ttaaagatgtgacgtcatgaatagtagcatg |
109 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| || |||| |
|
|
| T |
16285297 |
aaaaatgtctggcagcttgttcttgaaattctgagaacgttctcaaaaatttgctttggacagcttgcattaaag-tgtgacatcatgaataataccatg |
16285199 |
T |
|
| Q |
110 |
cagaaatcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggat |
209 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
16285198 |
cagaattcttgcttgctagttggcaaccaagattgcttttgttgggctgttaaactctcacgccttggagagaaagaaaacaagtacaatagatttggat |
16285099 |
T |
|
| Q |
210 |
tttatctattcctttgctttgatgtgatgtccat |
243 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |
|
|
| T |
16285098 |
tttatctattcctttgtcttgatgtgttgtccat |
16285065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 25891596 - 25891816
Alignment:
| Q |
4 |
tcttgtgaaaaatgcct-ggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgct-taaagatgtgacgtcatgaata |
101 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| ||||||||| |
|
|
| T |
25891596 |
tcttgtgaaaaatttcttggcagattgttctcgaaattctgagaacgttctcaaaaatctgctt-ggacaacttgcaataaag-tgtgacatcatgaata |
25891693 |
T |
|
| Q |
102 |
gtagcatgcagaaatcttgtttgctagttggcaaccaagattgcttttg-ttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaaga |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||| || || |||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
25891694 |
gtacgatgcagatttcttgtttgctagttggcaaccaagattgcttttgtttgtgcagtcatacttacacgccttggagagaaagaaagcaagtacaagt |
25891793 |
T |
|
| Q |
201 |
gacttggattttatctattccttt |
224 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
25891794 |
ga-ttctattttatctattccttt |
25891816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 6789 - 7012
Alignment:
| Q |
22 |
gcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgcttaaagatgtgacgtcatgaatagtagcatgcagaaatcttgt |
121 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| | |||||||||| ||||||||||| || |||||| |||||||||||| |||||||| | || | |
|
|
| T |
6789 |
gcagcttgttttcgaaattctaagaacgttcttataaatctgctt-ggacagcttgcaataaattgtgacatcatgaatagtaccatgcagatttattat |
6887 |
T |
|
| Q |
122 |
ttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggattttatctattcc |
221 |
Q |
| |
|
||||||||||||||||||||||| |||| || | ||||| || || ||||||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
6888 |
ttgctagttggcaaccaagattgtttttcttgtgttgtcatactcacacgccttggagagaaagaaagcaagtacaagtga-ttgtattttatctattcc |
6986 |
T |
|
| Q |
222 |
ttt--gctttgatgtgatgtccatctc |
246 |
Q |
| |
|
||| || |||||||| |||||||||| |
|
|
| T |
6987 |
ttttagc-ttgatgtgttgtccatctc |
7012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 25511284 - 25511391
Alignment:
| Q |
116 |
tcttgtttgctagttggcaaccaagattgcttttgttaagctgtcaatttctcatgccttggagagaaagaaagcaagtacaagagacttggattttatc |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| || |||||||||| || ||| |||||||| |
|
|
| T |
25511284 |
tcttgtttgctagttggtaaccaagattgcttttgttgggctgtcatactctcaacccttggagagaaaggaaacaagtacaagtga-ttgtattttatc |
25511382 |
T |
|
| Q |
216 |
tattccttt |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
25511383 |
tattccttt |
25511391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 25511186 - 25511245
Alignment:
| Q |
4 |
tcttgtgaaaaat-gcctggcagcttgttctcgaaattctgagaacgttctcaaaaatct |
62 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
25511186 |
tcttgtgaaaaattgtttggcagattgttctcgaaattatgagaacgttgtcaaaaatct |
25511245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 163411 - 163354
Alignment:
| Q |
20 |
tggcagcttgttctcgaaattctgagaacgttctcaaaaatctgctttggacagcttgc |
78 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
163411 |
tggcagtttgttcttgaaattctgagaacgttctcaaaaatctgc-ttggacagcttgc |
163354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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