View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_5 (Length: 636)
Name: NF6914_low_5
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 111 - 626
Target Start/End: Complemental strand, 35364109 - 35363594
Alignment:
| Q |
111 |
ggtaagaaagttgaaaatatattgattatatggtggattctaggtcttgaaatttataaaattccaaaataatctatgatattgaaaatccttaaccgca |
210 |
Q |
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| T |
35364109 |
ggtaagaaagttgaaaatatattgattatatggtggattctaggtcttgaaatttataaaattccaaaataatctatgatattgaaaatccttaaccaca |
35364010 |
T |
|
| Q |
211 |
ttagccctttcgagaaaatttcagcgattatatattgactaaccaaaagactcatgtgatcgatgattttaaatttctgtaatcatattagaatttcgtt |
310 |
Q |
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| T |
35364009 |
ttagccctttcgagaaaatttcagcgattatatattgactaaccaaaagactcatgtgatcgatgattttaaatttctgaaatcatattagaatttcgtt |
35363910 |
T |
|
| Q |
311 |
tatttatgtgaccaaattatgggatgcctacaattttaggactaagttggtgattcattccttaacatgactacttaaatttactatttgactgatctag |
410 |
Q |
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| T |
35363909 |
tatttatgtgaccaaattatgggatgcctacaattttaggactaaattggtgattcactccttaacatgactacttaaatttactctttgactgatctag |
35363810 |
T |
|
| Q |
411 |
ttgtgcttgtattgagacctgactagttgtcctttttctattcctttatcacaggtaactgagaaaaagaatgaactaggaaaactggaatcaattgatt |
510 |
Q |
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| T |
35363809 |
ttgtgcttgtcttgagacctgactagttatcctttttcttttcctttatcacaggtaactgagaaaaagaatgaactaggcaaactggaatcaattgatt |
35363710 |
T |
|
| Q |
511 |
gtggaaaaccattggatgaagcactaggggacatggtaattagtagcatttgaatatttgtcattgaaaaaacatgttgcattttttgcttacttgggac |
610 |
Q |
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| T |
35363709 |
gtggaaaaccattggatgaagcactaggggacatggtaattagtagcatttgaatatttgtcattgaaaaaacatgttgcattttttgcttacttgggac |
35363610 |
T |
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| Q |
611 |
ctgttgtggtttgatg |
626 |
Q |
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| T |
35363609 |
ctgttgtggtttgatg |
35363594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 389 - 552
Target Start/End: Original strand, 35383072 - 35383235
Alignment:
| Q |
389 |
atttactatttgactgatctagttgtgcttgtattgagacctgactagttgtcctttttctattcctttatcacaggtaactgagaaaaagaatgaacta |
488 |
Q |
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| T |
35383072 |
atttactgtttgattaatgtagttgtgtatgtcttcagacctgattggttgtcctttttcttttccattctcacagataactgagaaaaagaatgaacta |
35383171 |
T |
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| Q |
489 |
ggaaaactggaatcaattgattgtggaaaaccattggatgaagcactaggggacatggtaatta |
552 |
Q |
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| T |
35383172 |
ggcaagcttgaatcaattgattgtggaaagccactggatgaagcactagcggatctggtaatta |
35383235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 35382757 - 35382804
Alignment:
| Q |
153 |
ggtcttgaaatttataaaattccaaaataatctatgatattgaaaatc |
200 |
Q |
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| T |
35382757 |
ggtcttgaaattaataaaattccaaaatagtctatgaaattggaaatc |
35382804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 35364203 - 35364173
Alignment:
| Q |
18 |
aataaagccagacaaatgtgacctatttcac |
48 |
Q |
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| T |
35364203 |
aataaagccagacaaatgtgacctatttcac |
35364173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 35382948 - 35383048
Alignment:
| Q |
255 |
aaaagactcatgtgatcgatgattttaaatttctgtaatcatattagaatttcgtttatttatgtgaccaaattatgggatgcctacaattttaggacta |
354 |
Q |
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| T |
35382948 |
aaaagacttgtgggatcgatgattttaaatttctaagatcacttcagaattttgttcatttgagggaccatgttatgggatgcttacaatttcaggacta |
35383047 |
T |
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| Q |
355 |
a |
355 |
Q |
| |
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| T |
35383048 |
a |
35383048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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