View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_54 (Length: 244)

Name: NF6914_low_54
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_54
NF6914_low_54
[»] chr6 (13 HSPs)
chr6 (1-231)||(31562541-31562771)
chr6 (1-165)||(33644326-33644490)
chr6 (3-176)||(9166812-9166985)
chr6 (1-165)||(33271883-33272047)
chr6 (1-176)||(33057627-33057802)
chr6 (1-166)||(33304542-33304707)
chr6 (1-176)||(33410063-33410238)
chr6 (1-176)||(33285676-33285851)
chr6 (9-176)||(33388226-33388393)
chr6 (1-176)||(33262684-33262859)
chr6 (1-176)||(33399112-33399287)
chr6 (1-159)||(33358925-33359083)
chr6 (1-107)||(28870013-28870119)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-165)||(705-869)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-165)||(6451-6615)
[»] chr2 (1 HSPs)
chr2 (1-176)||(17440655-17440830)
[»] chr4 (7 HSPs)
chr4 (1-106)||(31157275-31157380)
chr4 (1-97)||(31504032-31504128)
chr4 (5-129)||(31148365-31148489)
chr4 (5-98)||(31478846-31478939)
chr4 (1-97)||(31498902-31498998)
chr4 (68-105)||(31526532-31526569)
chr4 (27-99)||(31472390-31472462)
[»] chr7 (1 HSPs)
chr7 (5-102)||(6785236-6785333)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31562771 - 31562541
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562771 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 31562672  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaaagatataatctgcacaacaaaggc 200  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562671 ttctagcgagcttaaacattcaattgcatcaggcacttggcttagacggcaaaagctaatgtcaactgtacgcaaaagatataatctgcacaacaaaggc 31562572  T
Q  201 aacaagtatgtgtctgttgaatcttgtgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  31562571 aacaagtatgtgtctgttgaatcttgtgatg 31562541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33644490 - 33644326
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| ||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  33644490 attccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatagtttccccctaaatttaatct 33644391  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaa 165  Q
    |||||||||   |||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  33644390 ttctagcgaatgtaaacattcaattgaatcaggaacatggcttagacggcaatagctaatgtcaa 33644326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 9166812 - 9166985
Alignment:
Q  3 tccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatcttt 102  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||| ||||||||||    
T  9166812 tccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgcaaaatcgattccccctaagtttaatcttt 9166911  T
Q  103 ctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||| ||| |||||||||||||| ||||||||  ||||||||| ||||| ||||||||||||||  |||||||    
T  9166912 ctagccaccgtaaacattcaattgtatcaggcaattggcttagatggcaatagctaatgtcaacttcacgcaaa 9166985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 33271883 - 33272047
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||    
T  33271883 attccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaattgtttccccctaaatctaatct 33271982  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaa 165  Q
    ||||||| |   ||||||||||||||||||||| || |||| |||| ||||||||||||||||||    
T  33271983 ttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaaagctaatgtcaa 33272047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33057627 - 33057802
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| ||||||| |||||||||||||    
T  33057627 attccaacaatttgcaatgctccaaatttaaatatacaagtttggatagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatct 33057726  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||||| |   ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||  ||||||||    
T  33057727 ttctagccaatgtaaacattcaattgcatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaa 33057802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33304542 - 33304707
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||||| |||| ||||||||    
T  33304542 attccaacaacatgcaatgctgcaaatttaaatatacaagtttggaaagcttcctcaggctaggtagagtcacaaaattgtttccctctaagtttaatct 33304641  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaac 166  Q
    |||||||||   ||||||||||||||||||||| || ||||||||| |||||||||||||||||||    
T  33304642 ttctagcgagtataaacattcaattgcatcaggaacttggcttagatggcaaaagctaatgtcaac 33304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33410063 - 33410238
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  33410063 attccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtagtgtcacaaaatagtttcccgctaaatataatct 33410162  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    |||||||||   ||||| ||||||||||||||| || ||| ||||| ||||||||||||| ||||||  |||||||    
T  33410163 ttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaaagctaatatcaacttgacgcaaa 33410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33285676 - 33285851
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||| |||||||||||| |||||| |    
T  33285676 attccaacaacttgcaatgctccaaatttaaatatacaagtttggacagctttctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatat 33285775  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||||| |   |||||||||||||||||  | ||| ||||||||||||||||||||||||| ||||  |||||||    
T  33285776 ttctagccaatataaacattcaattgcatatgacacttggcttagacggcaaaagctaatgttaacttcacgcaaa 33285851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 33388226 - 33388393
Alignment:
Q  9 aactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcg 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  33388226 aacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtg 33388325  T
Q  109 accttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    |   |||||||||||||| ||| || || ||  ||||| | |||||||||||||||||| ||||||||    
T  33388326 agtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaatgtcaactttacgcaaa 33388393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33262684 - 33262859
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||    
T  33262684 attccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatcatttccccctaaatttaatct 33262783  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||||| |   ||| ||||||||||   ||||||| |||| ||||  ||||||||| ||||||||  ||||||||    
T  33262784 ttctagccaatgtaagcattcaattgtgccaggcacttggcgtagatagcaaaagcttatgtcaacattacgcaaa 33262859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33399112 - 33399287
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| ||| || |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||  ||||||||||||    
T  33399112 attccaacaacttgcagtgttccaaatttaaatatacaagttcggaaagcttcctcaggctaggtagtgtcacaaaattgtttccctttaaatttaatct 33399211  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||||| |   ||||  ||||||||||||||| || |||||||||  |||||||||||||||||||  |||||||    
T  33399212 ttctagccaatgtaaatcttcaattgcatcaggaacttggcttagattgcaaaagctaatgtcaactccacgcaaa 33399287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 33358925 - 33359083
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||| |    
T  33358925 attccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggctaggtagtgtcacaaaatcgtttccccctaaatttaatat 33359024  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaa 159  Q
    ||||||| |   |||||||||||||||||| || || || |||||| ||||||| ||||    
T  33359025 ttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaaaactaa 33359083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 28870119 - 28870013
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||| ||| ||||||||    
T  28870119 attcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcagtgtcacaaaatagtttccccgtaagtttaatct 28870020  T
Q  101 ttctagc 107  Q
    |||||||    
T  28870019 ttctagc 28870013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 705 - 869
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||    
T  705 attccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatct 804  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaa 165  Q
    |||||||     ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  805 ttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaaagctaatgtcaa 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6451 - 6615
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||    
T  6451 attccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatct 6550  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaa 165  Q
    |||||||     ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  6551 ttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaaagctaatgtcaa 6615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 17440830 - 17440655
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||  ||||||||||||||||||||    
T  17440830 attccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggctaggtagtgtcgcaaaatcatttccccctaaatttaatct 17440731  T
Q  101 ttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaactgtacgcaaa 176  Q
    ||||| | |   |||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||  |||||||    
T  17440730 ttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaactaatgtcaacttcacgcaaa 17440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31157275 - 31157380
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatct 100  Q
    ||||||| | || |||||||||||| ||||||||||||||||||||||||| || || |||||| ||||||||||||| ||| ||||||| |||||||||    
T  31157275 attccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcacaaaattgttcccccctatatttaatct 31157374  T
Q  101 ttctag 106  Q
    ||||||    
T  31157375 ttctag 31157380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31504128 - 31504032
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaa 97  Q
    |||||||||  | |||||||||||| ||||||||||||||||||||||||| || || |||||||| |||||||||||  ||||||||||| |||||    
T  31504128 attccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaaaattatttccccctaagtttaa 31504032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 31148365 - 31148489
Alignment:
Q  5 caacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttct 104  Q
    ||||||||  ||||||| ||| ||||||||| ||||| |||| |||||||  | ||||||||  |||||||||| ||||||||||| |||||||||||||    
T  31148365 caacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttccccctagatttaatctttct 31148464  T
Q  105 agcgaccttaaacattcaattgcat 129  Q
    ||| | | ||||| | |||||||||    
T  31148465 agccaacgtaaacgtccaattgcat 31148489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 31478939 - 31478846
Alignment:
Q  5 caacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaat 98  Q
    ||||| || ||||||||| ||  |||||||||||||||| ||||||| || ||  ||||||| ||||||||||| |||||||||||||||||||    
T  31478939 caacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaaaattgtttccccctaaatttaat 31478846  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31498998 - 31498902
Alignment:
Q  1 attccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaa 97  Q
    |||||||||| | |||||| || || |||||| |||||||||||||||| | || || |||||||| ||||||||| | ||||||||||||||||||    
T  31498998 attccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtttccccctaaatttaa 31498902  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 31526532 - 31526569
Alignment:
Q  68 tgtcacaaaatagtttccccctaaatttaatctttcta 105  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31526532 tgtcacaaaattgtttccccctaaatttaatctttcta 31526569  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 31472462 - 31472390
Alignment:
Q  27 tttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatc 99  Q
    ||||||||||||||||||||||||| || |  |||||||| |||||||||||  || || |||| ||||||||    
T  31472462 tttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaattattccctcctacatttaatc 31472390  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 6785333 - 6785236
Alignment:
Q  5 caacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatcttt 102  Q
    |||||||| ||| || ||||| ||||||||||| ||||||||||||| |  || |||||| | ||||||||||| |||||||||||||||||||||||    
T  6785333 caacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggtttccccctaaatttaatcttt 6785236  T

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